Analysis of interatomic Contacts of Structural Units in PDB entry:
1BKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BKP entry

There are 2 chains in PDB entry 1BKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2VAL 279
B
 THR 2VAL 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1BKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 18Right-handed alpha
Helix 2
2
A
65 76Right-handed alpha
Helix 3
3
A
83 89Right-handed alpha
Helix 4
4
A
95 97Right-handed 310
Helix 5
5
A
108 113Right-handed 310
Helix 6
6
A
126 136Right-handed alpha
Helix 7
7
A
153 155Right-handed 310
Helix 8
8
A
189 207Right-handed alpha
Helix 9
9
A
225 236Right-handed 310
Helix 10
10
A
254 256Right-handed 310
Helix 11
11
A
259 261Right-handed 310
Helix 12
12
B
4 18Right-handed alpha
Helix 13
13
B
65 76Right-handed alpha
Helix 14
14
B
83 89Right-handed alpha
Helix 15
15
B
95 97Right-handed 310
Helix 16
16
B
108 113Right-handed 310
Helix 17
17
B
126 136Right-handed alpha
Helix 18
18
B
153 155Right-handed 310
Helix 19
19
B
189 207Right-handed alpha
Helix 20
20
B
225 236Right-handed 310
Helix 21
21
B
254 256Right-handed 310
Helix 22
22
B
259 261Right-handed 310
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There are 8 sheets in PDB entry 1BKP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
182 184parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
214 218anti-parallel
Strand 3
A
173 180parallel
Strand 4
A
162 170anti-parallel
Strand 5
A
144 146anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
122 124anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
262 265anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
220 224anti-parallel
Strand 3
B
182 184parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
214 218anti-parallel
Strand 3
B
173 180parallel
Strand 4
B
162 170anti-parallel
Strand 5
B
144 146anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 119first strand
Strand 2
B
122 124anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 247first strand
Strand 2
B
262 265anti-parallel
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