Analysis of interatomic Contacts of Structural Units in PDB entry:
1BMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BMD entry

There are 2 chains in PDB entry 1BMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0ILE 332
B
 MET 0ILE 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1BMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
BA
A
14 24Right-handed alpha
Helix 2
CA
A
43 57Right-handed alpha
Helix 3
CPA
A
73 76Right-handed alpha
Helix 4
DEA
A
97 118Right-handed alpha
Helix 5
1FA
A
132 141Right-handed alpha
Helix 6
2FA
A
156 170Right-handed alpha
Helix 7
GPA
A
208 212Right-handed alpha
Helix 8
1GA
A
215 227Right-handed alpha
Helix 9
2GA
A
229 237Right-handed alpha
Helix 10
3GA
A
242 257Right-handed alpha
Helix 11
HA
A
306 328Right-handed alpha
Helix 12
BB
B
14 24Right-handed alpha
Helix 13
CB
B
43 57Right-handed alpha
Helix 14
CPB
B
73 76Right-handed alpha
Helix 15
DEB
B
97 118Right-handed alpha
Helix 16
1FB
B
132 141Right-handed alpha
Helix 17
2FB
B
156 170Right-handed alpha
Helix 18
GPB
B
208 212Right-handed alpha
Helix 19
1GB
B
215 227Right-handed alpha
Helix 20
2GB
B
229 237Right-handed alpha
Helix 21
3GB
B
242 258Right-handed alpha
Helix 22
HB
B
306 328Right-handed alpha
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There are 6 sheets in PDB entry 1BMD. Click on sheet of interest to get list of strands forming it: S1A, S2A, S3A, S1B, S2B, S3B,

There are 6 strands in S1A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 70first strand
Strand 2
A
35 40parallel
Strand 3
A
4 9parallel
Strand 4
A
82 85parallel
Strand 5
A
124 127parallel
Strand 6
A
151 153parallel
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There are 3 strands in S2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 183first strand
Strand 2
A
191 199anti-parallel
Strand 3
A
206 207anti-parallel
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There are 3 strands in S3A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 271first strand
Strand 2
A
284 292anti-parallel
Strand 3
A
295 298anti-parallel
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There are 6 strands in S1B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 70first strand
Strand 2
B
35 40parallel
Strand 3
B
4 9parallel
Strand 4
B
82 85parallel
Strand 5
B
124 127parallel
Strand 6
B
151 153parallel
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There are 3 strands in S2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 183first strand
Strand 2
B
191 199anti-parallel
Strand 3
B
206 207anti-parallel
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There are 3 strands in S3B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 271first strand
Strand 2
B
284 292anti-parallel
Strand 3
B
295 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il