Analysis of interatomic Contacts of Structural Units in PDB entry:
1BMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BMM entry

There are 3 chains in PDB entry 1BMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLY 1TYR 14
H
 ILE 16GLY 246
I
 ASP 55TYR 63
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 1BMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
L
14 14Right-handed alpha
Helix 2
H4
H
125 130Right-handed alpha
Helix 3
H5
H
164 172Right-handed alpha
Helix 4
H7
H
234 243Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1BMM. Click on sheet of interest to get list of strands forming it: B1, B2,

There are 7 strands in B1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 36first strand
Strand 2
H
39 47anti-parallel
Strand 3
H
50 54parallel
Strand 4
H
103 109anti-parallel
Strand 5
H
81 91anti-parallel
Strand 6
H
63 69anti-parallel
Strand 7
H
30 36anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
134 140first strand
Strand 2
H
155 162anti-parallel
Strand 3
H
179 184parallel
Strand 4
H
226 231anti-parallel
Strand 5
H
205 215anti-parallel
Strand 6
H
197 203anti-parallel
Strand 7
H
134 140anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il