Analysis of interatomic Contacts of Structural Units in PDB entry:
1BO1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BO1 entry

There are 2 chains in PDB entry 1BO1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 34THR 416
B
 PHE 36THR 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1BO1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 59Right-handed alpha
Helix 2
2
A
68 71Right-handed 310
Helix 3
3
A
100 110Right-handed alpha
Helix 4
4
A
114 122Right-handed alpha
Helix 5
5
A
154 173Right-handed alpha
Helix 6
6
A
229 231Right-handed 310
Helix 7
7
A
240 245Right-handed alpha
Helix 8
8
A
256 274Right-handed alpha
Helix 9
9
A
288 301Right-handed alpha
Helix 10
10
A
400 414Right-handed alpha
Helix 11
11
B
41 59Right-handed alpha
Helix 12
12
B
68 71Right-handed 310
Helix 13
13
B
100 110Right-handed alpha
Helix 14
14
B
114 122Right-handed alpha
Helix 15
15
B
154 173Right-handed alpha
Helix 16
16
B
229 232Right-handed 310
Helix 17
17
B
240 245Right-handed alpha
Helix 18
18
B
256 273Right-handed alpha
Helix 19
19
B
288 302Right-handed alpha
Helix 20
20
B
403 414Right-handed alpha
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There are 4 sheets in PDB entry 1BO1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 80first strand
Strand 2
A
92 98anti-parallel
Strand 3
A
183 191anti-parallel
Strand 4
A
194 202anti-parallel
Strand 5
A
147 150anti-parallel
Strand 6
A
139 141anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 217first strand
Strand 2
A
281 287anti-parallel
Strand 3
A
361 367anti-parallel
Strand 4
A
353 355anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 80first strand
Strand 2
B
92 98anti-parallel
Strand 3
B
183 191anti-parallel
Strand 4
B
194 202anti-parallel
Strand 5
B
147 150anti-parallel
Strand 6
B
139 141anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 287first strand
Strand 2
B
361 367anti-parallel
Strand 3
B
353 355anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il