Analysis of interatomic Contacts of Structural Units in PDB entry:
1BOB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BOB entry

There is 1 chain in PDB entry 1BOB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 6SER 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1BOB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
8 10Right-handed 310
Helix 2
2
A
15 18Right-handed alpha
Helix 3
3
A
37 40Right-handed alpha
Helix 4
4
A
83 90Right-handed alpha
Helix 5
5
A
101 114Right-handed alpha
Helix 6
6
A
144 160Right-handed alpha
Helix 7
7
A
231 245Right-handed alpha
Helix 8
8
A
259 275Right-handed alpha
Helix 9
9
A
278 283Right-handed alpha
Helix 10
10
A
290 300Right-handed alpha
Helix 11
11
A
304 317Right-handed alpha
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There are 3 sheets in PDB entry 1BOB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
12 14first strand
Strand 2
A
45 47anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
28 32first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
53 59parallel
Strand 4
A
65 70anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
122 129first strand
Strand 2
A
132 139anti-parallel
Strand 3
A
174 181anti-parallel
Strand 4
A
187 196anti-parallel
Strand 5
A
213 222anti-parallel
Strand 6
A
249 254parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il