Analysis of interatomic Contacts of Structural Units in PDB entry:
1BOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BOT entry

There are 2 chains in PDB entry 1BOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 LYS 3HIS 499
Z
 GLU 2HIS 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 1BOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
O
49 67Right-handed alpha
Helix 2
2
O
71 73Right-handed 310
Helix 3
3
O
108 118Right-handed 310
Helix 4
4
O
121 128Right-handed alpha
Helix 5
5
O
137 147Right-handed alpha
Helix 6
6
O
151 156Right-handed alpha
Helix 7
7
O
165 174Right-handed alpha
Helix 8
8
O
183 188Right-handed alpha
Helix 9
9
O
201 207Right-handed alpha
Helix 10
10
O
211 213Right-handed 310
Helix 11
11
O
245 252Right-handed alpha
Helix 12
12
O
310 318Right-handed alpha
Helix 13
13
O
329 335Right-handed alpha
Helix 14
14
O
347 349Right-handed 310
Helix 15
15
O
373 399Right-handed alpha
Helix 16
16
O
411 414Right-handed 310
Helix 17
17
O
416 426Right-handed alpha
Helix 18
18
O
437 451Right-handed 310
Helix 19
19
O
476 493Right-handed alpha
Helix 20
20
Z
49 66Right-handed alpha
Helix 21
21
Z
71 73Right-handed 310
Helix 22
22
Z
107 117Right-handed 310
Helix 23
23
Z
121 127Right-handed alpha
Helix 24
24
Z
137 147Right-handed alpha
Helix 25
25
Z
152 157Right-handed alpha
Helix 26
26
Z
165 173Right-handed alpha
Helix 27
27
Z
183 188Right-handed alpha
Helix 28
28
Z
201 207Right-handed alpha
Helix 29
29
Z
245 252Right-handed alpha
Helix 30
30
Z
310 318Right-handed alpha
Helix 31
31
Z
329 334Right-handed alpha
Helix 32
32
Z
347 349Right-handed 310
Helix 33
33
Z
373 399Right-handed alpha
Helix 34
34
Z
411 414Right-handed 310
Helix 35
35
Z
416 426Right-handed alpha
Helix 36
36
Z
438 451Right-handed alpha
Helix 37
37
Z
457 460Right-handed alpha
Helix 38
38
Z
476 493Right-handed alpha
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There are 12 sheets in PDB entry 1BOT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
225 227first strand
Strand 2
O
237 244anti-parallel
Strand 3
O
74 81parallel
Strand 4
O
5 11parallel
Strand 5
O
15 22anti-parallel
Strand 6
O
27 34anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
87 90first strand
Strand 2
O
160 163anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
180 182first strand
Strand 2
O
216 218parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
261 265first strand
Strand 2
O
269 274anti-parallel
Strand 3
O
298 306anti-parallel
Strand 4
O
287 292anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
343 345first strand
Strand 2
O
363 365anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
405 408first strand
Strand 2
O
429 432parallel
Strand 3
O
468 470anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
30 34first strand
Strand 2
Z
15 22anti-parallel
Strand 3
Z
5 11anti-parallel
Strand 4
Z
74 81parallel
Strand 5
Z
236 244parallel
Strand 6
Z
225 228anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
86 90first strand
Strand 2
Z
160 164anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
180 182first strand
Strand 2
Z
216 218parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
261 265first strand
Strand 2
Z
269 276anti-parallel
Strand 3
Z
297 306anti-parallel
Strand 4
Z
287 293anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
343 345first strand
Strand 2
Z
363 365anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
405 408first strand
Strand 2
Z
429 433parallel
Strand 3
Z
466 470anti-parallel
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