Analysis of interatomic Contacts of Structural Units in PDB entry:
1BP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1BP5 entry

There are 4 chains in PDB entry 1BP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	CYS 331
B	LYS 4	CYS 331
C	LYS 4	ASP 337
D	LYS 4	ASP 337

There are 60 helices in PDB entry 1BP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	28	Right-handed alpha
Helix 2	2	A	44	54	Right-handed alpha
Helix 3	3	A	63	72	Right-handed alpha
Helix 4	4	A	108	112	Right-handed 310
Helix 5	5	A	128	136	Right-handed alpha
Helix 6	6	A	137	139	Right-handed 310
Helix 7	7	A	145	154	Right-handed alpha
Helix 8	8	A	167	172	Right-handed 310
Helix 9	9	A	186	197	Right-handed alpha
Helix 10	10	A	207	214	Right-handed alpha
Helix 11	11	A	216	221	Right-handed alpha
Helix 12	12	A	234	241	Right-handed 310
Helix 13	13	A	259	275	Right-handed alpha
Helix 14	14	A	310	316	Right-handed alpha
Helix 15	15	A	316	329	Right-handed alpha
Helix 16	16	B	12	30	Right-handed alpha
Helix 17	17	B	44	54	Right-handed alpha
Helix 18	18	B	63	72	Right-handed alpha
Helix 19	19	B	108	112	Right-handed 310
Helix 20	20	B	128	136	Right-handed alpha
Helix 21	21	B	137	139	Right-handed 310
Helix 22	22	B	145	154	Right-handed alpha
Helix 23	23	B	167	172	Right-handed 310
Helix 24	24	B	186	197	Right-handed alpha
Helix 25	25	B	207	214	Right-handed alpha
Helix 26	26	B	216	221	Right-handed alpha
Helix 27	27	B	234	238	Right-handed 310
Helix 28	28	B	259	275	Right-handed alpha
Helix 29	29	B	310	316	Right-handed alpha
Helix 30	30	B	316	329	Right-handed alpha
Helix 31	31	C	12	30	Right-handed alpha
Helix 32	32	C	44	54	Right-handed alpha
Helix 33	33	C	63	72	Right-handed alpha
Helix 34	34	C	108	112	Right-handed 310
Helix 35	35	C	128	136	Right-handed alpha
Helix 36	36	C	137	139	Right-handed 310
Helix 37	37	C	145	152	Right-handed alpha
Helix 38	38	C	167	172	Right-handed 310
Helix 39	39	C	186	197	Right-handed alpha
Helix 40	40	C	208	214	Right-handed alpha
Helix 41	41	C	216	221	Right-handed alpha
Helix 42	42	C	236	241	Right-handed 310
Helix 43	43	C	259	275	Right-handed alpha
Helix 44	44	C	310	316	Right-handed alpha
Helix 45	45	C	316	329	Right-handed alpha
Helix 46	46	D	12	30	Right-handed alpha
Helix 47	47	D	44	54	Right-handed alpha
Helix 48	48	D	63	72	Right-handed alpha
Helix 49	49	D	108	112	Right-handed 310
Helix 50	50	D	128	136	Right-handed alpha
Helix 51	51	D	137	139	Right-handed 310
Helix 52	52	D	145	152	Right-handed alpha
Helix 53	53	D	167	172	Right-handed 310
Helix 54	54	D	186	197	Right-handed alpha
Helix 55	55	D	208	214	Right-handed alpha
Helix 56	56	D	216	221	Right-handed alpha
Helix 57	57	D	236	241	Right-handed 310
Helix 58	58	D	259	275	Right-handed alpha
Helix 59	59	D	310	316	Right-handed alpha
Helix 60	60	D	316	329	Right-handed alpha

There are 16 sheets in PDB entry 1BP5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	10	first strand
Strand 2	A	36	41	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	250	254	anti-parallel
Strand 3	A	77	84	anti-parallel
Strand 4	A	301	304	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	94	101	anti-parallel
Strand 3	A	202	206	anti-parallel
Strand 4	A	116	119	parallel
Strand 5	A	156	159	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	223	227	anti-parallel
Strand 3	A	231	233	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	10	first strand
Strand 2	B	36	41	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	250	254	anti-parallel
Strand 3	B	77	84	anti-parallel
Strand 4	B	301	304	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	94	101	anti-parallel
Strand 3	B	202	206	anti-parallel
Strand 4	B	117	119	parallel
Strand 5	B	157	159	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	223	227	anti-parallel
Strand 3	B	231	233	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	36	41	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	250	254	anti-parallel
Strand 3	C	77	84	anti-parallel
Strand 4	C	301	304	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	94	101	anti-parallel
Strand 3	C	202	206	anti-parallel
Strand 4	C	116	119	parallel
Strand 5	C	156	159	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	223	227	anti-parallel
Strand 3	C	231	234	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	36	41	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	250	254	anti-parallel
Strand 3	D	77	84	anti-parallel
Strand 4	D	301	304	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	94	101	anti-parallel
Strand 3	D	202	206	anti-parallel
Strand 4	D	117	119	parallel
Strand 5	D	157	159	parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	223	226	anti-parallel
Strand 3	D	232	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1BP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
1BP5