Analysis of interatomic Contacts of Structural Units in PDB entry:
1BPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BPE entry

There is 1 chain in PDB entry 1BPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 12GLU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1BPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
74 79Right-handed alpha
Helix 3
3
A
81 86Right-handed alpha
Helix 4
4
A
93 102Right-handed alpha
Helix 5
5
A
107 117Right-handed alpha
Helix 6
6
A
121 128Right-handed alpha
Helix 7
7
A
129 132Right-handed 310
Helix 8
8
A
133 142Right-handed alpha
Helix 9
9
A
144 148Right-handed 310
Helix 10
10
A
151 170Right-handed alpha
Helix 11
11
A
178 184Right-handed alpha
Helix 12
12
A
208 221Right-handed alpha
Helix 13
13
A
264 274Right-handed alpha
Helix 14
14
A
277 289Right-handed alpha
Helix 15
15
A
316 323Right-handed alpha
Helix 16
16
A
329 333Right-handed 310
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There are 2 sheets in PDB entry 1BPE. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
193 196anti-parallel
Strand 3
A
254 259parallel
Strand 4
A
234 238anti-parallel
Strand 5
A
226 227anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
299 300anti-parallel
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