Analysis of interatomic Contacts of Structural Units in PDB entry:
1BPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BPM entry

There is 1 chain in PDB entry 1BPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1GLN 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1BPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
22 30Right-handed alpha
Helix 2
B
A
34 40Right-handed alpha
Helix 3
C
A
84 102Right-handed alpha
Helix 4
D
A
116 126Right-handed alpha
Helix 5
E
A
151 172Right-handed alpha
Helix 6
F
A
180 194Right-handed alpha
Helix 7
G
A
205 210Right-handed alpha
Helix 8
H
A
214 220Right-handed alpha
Helix 9
I
A
275 288Right-handed alpha
Helix 10
J
A
334 348Right-handed alpha
Helix 11
K
A
363 367Right-handed alpha
Helix 12
L
A
380 392Right-handed alpha
Helix 13
M
A
405 409Right-handed alpha
Helix 14
N
A
428 436Right-handed alpha
Helix 15
O
A
472 482Right-handed alpha
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There are 3 sheets in PDB entry 1BPM. Click on sheet of interest to get list of strands forming it: 1, 2, 3,

There are 5 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
49 56anti-parallel
Strand 3
A
62 69anti-parallel
Strand 4
A
106 111parallel
Strand 5
A
142 146parallel
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There are 8 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 203first strand
Strand 2
A
228 235anti-parallel
Strand 3
A
244 256anti-parallel
Strand 4
A
295 305parallel
Strand 5
A
352 358parallel
Strand 6
A
373 376anti-parallel
Strand 7
A
396 400parallel
Strand 8
A
444 450anti-parallel
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There are 3 strands in 3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 320first strand
Strand 2
A
323 328anti-parallel
Strand 3
A
417 420parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il