Analysis of interatomic Contacts of Structural Units in PDB entry:
1BPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BPY entry

There are 4 chains in PDB entry 1BPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
T
 C 1 C 16
P
 G 1 G 9
D
 G 1 G 5
A
 THR 10GLU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1BPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
13 30Right-handed alpha
Helix 2
B
A
33 48Right-handed alpha
Helix 3
C
A
56 61Right-handed alpha
Helix 4
D
A
67 79Right-handed alpha
Helix 5
E
A
83 90Right-handed alpha
Helix 6
F
A
92 102Right-handed alpha
Helix 7
G
A
108 116Right-handed alpha
Helix 8
H
A
122 127Right-handed alpha
Helix 9
I
A
134 147Right-handed alpha
Helix 10
J
A
152 169Right-handed alpha
Helix 11
K
A
180 183Right-handed alpha
Helix 12
L
A
208 220Right-handed alpha
Helix 13
M
A
262 273Right-handed alpha
Helix 14
N
A
276 288Right-handed alpha
Helix 15
O
A
316 323Right-handed alpha
Helix 16
P
A
330 332Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 1BPY. Click on sheet of interest to get list of strands forming it: S1, S2, S3,

There are 2 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
187 188anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
253 258parallel
Strand 4
A
234 239anti-parallel
Strand 5
A
229 231anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
297 300anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il