Analysis of interatomic Contacts of Structural Units in PDB entry:
1BQG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BQG entry

There is 1 chain in PDB entry 1BQG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12MET 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1BQG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 78Right-handed alpha
Helix 2
2
A
83 96Right-handed 310
Helix 3
3
A
113 134Right-handed alpha
Helix 4
4
A
138 141Right-handed 310
Helix 5
5
A
163 165Right-handed 310
Helix 6
6
A
179 185Right-handed alpha
Helix 7
7
A
191 205Right-handed alpha
Helix 8
8
A
219 232Right-handed alpha
Helix 9
9
A
248 255Right-handed alpha
Helix 10
10
A
277 288Right-handed alpha
Helix 11
11
A
301 310Right-handed alpha
Helix 12
12
A
325 338Right-handed alpha
Helix 13
13
A
351 363Right-handed alpha
Helix 14
14
A
375 377Right-handed 310
Helix 15
15
A
409 420Right-handed alpha
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There are 4 sheets in PDB entry 1BQG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
41 51anti-parallel
Strand 3
A
16 27anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
394 396anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
209 213parallel
Strand 3
A
237 241parallel
Strand 4
A
264 266parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
341 343parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il