Analysis of interatomic Contacts of Structural Units in PDB entry:
1BRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BRM entry

There are 3 chains in PDB entry 1BRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 367
B
 MET 1ALA 367
C
 MET 1ALA 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1BRM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
37 39Right-handed 310
Helix 3
3
A
60 64Right-handed alpha
Helix 4
4
A
75 86Right-handed alpha
Helix 5
5
A
112 124Right-handed alpha
Helix 6
6
A
135 148Right-handed alpha
Helix 7
7
A
169 191Right-handed alpha
Helix 8
8
A
197 210Right-handed alpha
Helix 9
9
A
246 252Right-handed alpha
Helix 10
10
A
288 298Right-handed alpha
Helix 11
11
A
309 315Right-handed alpha
Helix 12
12
A
318 321Right-handed alpha
Helix 13
13
A
357 365Right-handed alpha
Helix 14
14
B
12 23Right-handed alpha
Helix 15
15
B
26 29Right-handed 310
Helix 16
16
B
60 64Right-handed alpha
Helix 17
17
B
75 88Right-handed alpha
Helix 18
18
B
112 124Right-handed alpha
Helix 19
19
B
135 150Right-handed alpha
Helix 20
20
B
169 191Right-handed alpha
Helix 21
21
B
197 210Right-handed alpha
Helix 22
22
B
246 252Right-handed alpha
Helix 23
23
B
288 298Right-handed alpha
Helix 24
24
B
309 315Right-handed alpha
Helix 25
25
B
318 321Right-handed alpha
Helix 26
26
B
357 365Right-handed alpha
Helix 27
27
C
12 24Right-handed alpha
Helix 28
28
C
26 28Right-handed 310
Helix 29
29
C
60 64Right-handed alpha
Helix 30
30
C
75 88Right-handed alpha
Helix 31
31
C
99 101Right-handed 310
Helix 32
32
C
112 124Right-handed alpha
Helix 33
33
C
135 150Right-handed alpha
Helix 34
34
C
169 191Right-handed alpha
Helix 35
35
C
197 209Right-handed alpha
Helix 36
36
C
246 252Right-handed alpha
Helix 37
37
C
288 298Right-handed alpha
Helix 38
38
C
309 315Right-handed alpha
Helix 39
39
C
318 321Right-handed alpha
Helix 40
40
C
357 365Right-handed alpha
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There are 6 sheets in PDB entry 1BRM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
2 7parallel
Strand 3
A
68 71parallel
Strand 4
A
93 96parallel
Strand 5
A
129 132parallel
Strand 6
A
107 110parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 267first strand
Strand 2
A
153 162parallel
Strand 3
A
273 282anti-parallel
Strand 4
A
341 349anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
2 7parallel
Strand 3
B
68 71parallel
Strand 4
B
93 96parallel
Strand 5
B
129 132parallel
Strand 6
B
107 110parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 267first strand
Strand 2
B
153 162parallel
Strand 3
B
273 282anti-parallel
Strand 4
B
341 349anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 34first strand
Strand 2
C
2 7parallel
Strand 3
C
68 71parallel
Strand 4
C
93 96parallel
Strand 5
C
129 132parallel
Strand 6
C
107 110parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
260 267first strand
Strand 2
C
153 162parallel
Strand 3
C
273 282anti-parallel
Strand 4
C
341 349anti-parallel
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