Analysis of interatomic Contacts of Structural Units in PDB entry:
1BRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BRY entry

There are 2 chains in PDB entry 1BRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Y
 ASP 1ALA 247
Z
 ASP 1ALA 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1BRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
Y
11 24Right-handed alpha
Helix 2
2
Y
43 46Right-handed 310
Helix 3
3
Y
86 93Right-handed alpha
Helix 4
4
Y
111 118Right-handed alpha
Helix 5
5
Y
122 124Right-handed 310
Helix 6
6
Y
129 140Right-handed alpha
Helix 7
7
Y
144 163Right-handed alpha
Helix 8
8
Y
165 173Right-handed alpha
Helix 9
9
Y
183 190Right-handed alpha
Helix 10
10
Y
192 204Right-handed alpha
Helix 11
11
Y
231 234Right-handed alpha
Helix 12
12
Y
243 245Right-handed 310
Helix 13
13
Z
11 24Right-handed alpha
Helix 14
14
Z
43 46Right-handed 310
Helix 15
15
Z
86 93Right-handed alpha
Helix 16
16
Z
111 118Right-handed alpha
Helix 17
17
Z
122 124Right-handed 310
Helix 18
18
Z
129 141Right-handed alpha
Helix 19
19
Z
144 163Right-handed alpha
Helix 20
20
Z
165 173Right-handed alpha
Helix 21
21
Z
183 190Right-handed alpha
Helix 22
22
Z
192 204Right-handed alpha
Helix 23
23
Z
231 234Right-handed alpha
Helix 24
24
Z
243 245Right-handed 310
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There are 6 sheets in PDB entry 1BRY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
2 5first strand
Strand 2
Y
47 53parallel
Strand 3
Y
59 65anti-parallel
Strand 4
Y
70 76anti-parallel
Strand 5
Y
79 82anti-parallel
Strand 6
Y
101 104parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
213 216first strand
Strand 2
Y
222 225anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
2 5first strand
Strand 2
Z
47 53parallel
Strand 3
Z
59 65anti-parallel
Strand 4
Z
70 76anti-parallel
Strand 5
Z
79 82anti-parallel
Strand 6
Z
101 104parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
213 216first strand
Strand 2
Z
222 225anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
27 31first strand
Strand 2
Y
34 37anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
27 31first strand
Strand 2
Z
34 37anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il