Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1BUQ entry
There are 2 chains in PDB entry 1BUQ
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
MET 1 | ALA 125 |
B
|
MET 201 | ALA 325 |
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There are 6
helices in PDB entry 1BUQ. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
H1 | A
| 5 |
21 | Right-handed alpha |
| Helix 2 |
H2 | A
| 23 |
30 | Right-handed alpha |
| Helix 3 |
H3 | A
| 48 |
60 | Right-handed alpha |
| Helix 4 |
H1 | B
| 205 |
221 | Right-handed alpha |
| Helix 5 |
H2 | B
| 223 |
230 | Right-handed alpha |
| Helix 6 |
H3 | B
| 248 |
260 | Right-handed alpha |
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There are
16 sheets in PDB entry 1BUQ. Click on sheet of
interest to get list of strands forming it:
SA1,
SA2,
SA3,
SA4,
SA5,
SA6,
SA7,
SA8,
SB1,
SB2,
SB3,
SB4,
SB5,
SB6,
SB7,
SB8,
There are 1
strands in SA1 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 34 |
38 | first strand |
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There are 1
strands in SA2 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 44 |
47 | first strand |
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There are 1
strands in SA3 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 63 |
67 | first strand |
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There are 1
strands in SA4 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 71 |
73 | first strand |
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There are 1
strands in SA5 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 78 |
87 | first strand |
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There are 1
strands in SA6 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 92 |
104 | first strand |
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There are 1
strands in SA7 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 111 |
116 | first strand |
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There are 1
strands in SA8 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 121 |
124 | first strand |
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There are 1
strands in SB1 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 234 |
238 | first strand |
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There are 1
strands in SB2 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 244 |
247 | first strand |
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There are 1
strands in SB3 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 263 |
267 | first strand |
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There are 1
strands in SB4 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 271 |
273 | first strand |
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There are 1
strands in SB5 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 278 |
287 | first strand |
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There are 1
strands in SB6 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 292 |
304 | first strand |
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There are 1
strands in SB7 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 311 |
316 | first strand |
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There are 1
strands in SB8 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 321 |
324 | first strand |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il