Analysis of interatomic Contacts of Structural Units in PDB entry:
1BVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1BVP entry

There are 6 chains in PDB entry 1BVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	MET 1	VAL 349
2	MET 1	VAL 349
3	MET 1	VAL 349
4	MET 1	VAL 349
5	MET 1	VAL 349
6	MET 1	VAL 349

There are 60 helices in PDB entry 1BVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	1	2	17	Right-handed alpha
Helix 2	2	1	27	44	Right-handed alpha
Helix 3	3	1	55	73	Right-handed alpha
Helix 4	4	1	88	94	Right-handed 310
Helix 5	5	1	103	116	Right-handed alpha
Helix 6	6	1	172	174	Right-handed 310
Helix 7	7	1	263	271	Right-handed alpha
Helix 8	8	1	276	288	Right-handed alpha
Helix 9	9	1	304	323	Right-handed alpha
Helix 10	10	1	341	347	Right-handed alpha
Helix 11	11	2	2	17	Right-handed alpha
Helix 12	12	2	27	44	Right-handed alpha
Helix 13	13	2	55	73	Right-handed alpha
Helix 14	14	2	88	94	Right-handed 310
Helix 15	15	2	103	116	Right-handed alpha
Helix 16	16	2	172	174	Right-handed 310
Helix 17	17	2	263	271	Right-handed alpha
Helix 18	18	2	276	288	Right-handed alpha
Helix 19	19	2	304	323	Right-handed alpha
Helix 20	20	2	341	347	Right-handed alpha
Helix 21	21	3	2	17	Right-handed alpha
Helix 22	22	3	27	44	Right-handed alpha
Helix 23	23	3	55	73	Right-handed alpha
Helix 24	24	3	88	94	Right-handed 310
Helix 25	25	3	103	116	Right-handed alpha
Helix 26	26	3	172	174	Right-handed 310
Helix 27	27	3	263	271	Right-handed alpha
Helix 28	28	3	276	288	Right-handed alpha
Helix 29	29	3	304	323	Right-handed alpha
Helix 30	30	3	341	347	Right-handed alpha
Helix 31	31	4	2	17	Right-handed alpha
Helix 32	32	4	27	44	Right-handed alpha
Helix 33	33	4	55	73	Right-handed alpha
Helix 34	34	4	88	94	Right-handed 310
Helix 35	35	4	103	116	Right-handed alpha
Helix 36	36	4	172	174	Right-handed 310
Helix 37	37	4	263	271	Right-handed alpha
Helix 38	38	4	276	288	Right-handed alpha
Helix 39	39	4	304	323	Right-handed alpha
Helix 40	40	4	341	347	Right-handed alpha
Helix 41	41	5	2	17	Right-handed alpha
Helix 42	42	5	27	44	Right-handed alpha
Helix 43	43	5	55	73	Right-handed alpha
Helix 44	44	5	88	94	Right-handed 310
Helix 45	45	5	103	116	Right-handed alpha
Helix 46	46	5	172	174	Right-handed 310
Helix 47	47	5	263	271	Right-handed alpha
Helix 48	48	5	276	288	Right-handed alpha
Helix 49	49	5	304	323	Right-handed alpha
Helix 50	50	5	341	347	Right-handed alpha
Helix 51	51	6	2	17	Right-handed alpha
Helix 52	52	6	27	44	Right-handed alpha
Helix 53	53	6	55	73	Right-handed alpha
Helix 54	54	6	88	94	Right-handed 310
Helix 55	55	6	103	116	Right-handed alpha
Helix 56	56	6	172	174	Right-handed 310
Helix 57	57	6	263	271	Right-handed alpha
Helix 58	58	6	276	288	Right-handed alpha
Helix 59	59	6	304	323	Right-handed alpha
Helix 60	60	6	341	347	Right-handed alpha

There are 24 sheets in PDB entry 1BVP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	223	225	first strand
Strand 2	1	184	190	anti-parallel
Strand 3	1	241	247	anti-parallel
Strand 4	1	158	163	anti-parallel
Strand 5	1	149	155	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	168	170	first strand
Strand 2	1	231	234	anti-parallel
Strand 3	1	209	212	anti-parallel
Strand 4	1	215	217	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	201	203	first strand
Strand 2	1	190	195	anti-parallel
Strand 3	2	134	136	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	223	225	first strand
Strand 2	2	184	190	anti-parallel
Strand 3	2	241	247	anti-parallel
Strand 4	2	158	163	anti-parallel
Strand 5	2	149	155	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	168	170	first strand
Strand 2	2	231	234	anti-parallel
Strand 3	2	209	212	anti-parallel
Strand 4	2	215	217	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	201	203	first strand
Strand 2	2	190	195	anti-parallel
Strand 3	3	134	136	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	223	225	first strand
Strand 2	3	184	190	anti-parallel
Strand 3	3	241	247	anti-parallel
Strand 4	3	158	163	anti-parallel
Strand 5	3	149	155	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	168	170	first strand
Strand 2	3	231	234	anti-parallel
Strand 3	3	209	212	anti-parallel
Strand 4	3	215	217	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	201	203	first strand
Strand 2	3	190	195	anti-parallel
Strand 3	1	134	136	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	223	225	first strand
Strand 2	4	184	190	anti-parallel
Strand 3	4	241	247	anti-parallel
Strand 4	4	158	163	anti-parallel
Strand 5	4	149	155	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	168	170	first strand
Strand 2	4	231	234	anti-parallel
Strand 3	4	209	212	anti-parallel
Strand 4	4	215	217	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	201	203	first strand
Strand 2	4	190	195	anti-parallel
Strand 3	5	134	136	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	223	225	first strand
Strand 2	5	184	190	anti-parallel
Strand 3	5	241	247	anti-parallel
Strand 4	5	158	163	anti-parallel
Strand 5	5	149	155	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	168	170	first strand
Strand 2	5	231	234	anti-parallel
Strand 3	5	209	212	anti-parallel
Strand 4	5	215	217	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	201	203	first strand
Strand 2	5	190	195	anti-parallel
Strand 3	6	134	136	parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	223	225	first strand
Strand 2	6	184	190	anti-parallel
Strand 3	6	241	247	anti-parallel
Strand 4	6	158	163	anti-parallel
Strand 5	6	149	155	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	168	170	first strand
Strand 2	6	231	234	anti-parallel
Strand 3	6	209	212	anti-parallel
Strand 4	6	215	217	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	201	203	first strand
Strand 2	6	190	195	anti-parallel
Strand 3	4	134	136	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	181	185	first strand
Strand 2	1	249	252	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	181	185	first strand
Strand 2	2	249	252	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	181	185	first strand
Strand 2	3	249	252	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	181	185	first strand
Strand 2	4	249	252	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	181	185	first strand
Strand 2	5	249	252	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	181	185	first strand
Strand 2	6	249	252	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1BVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
1BVP