Analysis of interatomic Contacts of Structural Units in PDB entry:
1BVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BVU entry

There are 6 chains in PDB entry 1BVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3LYS 418
B
 GLN 3LYS 418
C
 GLN 3LYS 418
D
 GLN 3LYS 418
E
 GLN 3LYS 418
F
 GLN 3LYS 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are111 helices in PDB entry 1BVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 19Right-handed alpha
Helix 2
2
A
24 31Right-handed alpha
Helix 3
3
A
79 96Right-handed alpha
Helix 4
4
A
111 113Right-handed 310
Helix 5
5
A
116 133Right-handed alpha
Helix 6
6
A
149 163Right-handed alpha
Helix 7
7
A
169 172Right-handed 310
Helix 8
8
A
178 180Right-handed 310
Helix 9
9
A
189 204Right-handed alpha
Helix 10
10
A
221 234Right-handed alpha
Helix 11
11
A
256 266Right-handed alpha
Helix 12
12
A
280 285Right-handed alpha
Helix 13
13
A
302 307Right-handed alpha
Helix 14
14
A
323 332Right-handed alpha
Helix 15
15
A
339 342Right-handed alpha
Helix 16
16
A
344 359Right-handed 310
Helix 17
17
A
365 390Right-handed alpha
Helix 18
18
A
394 413Right-handed alpha
Helix 19
19
B
4 19Right-handed alpha
Helix 20
20
B
24 31Right-handed alpha
Helix 21
21
B
79 96Right-handed alpha
Helix 22
22
B
111 113Right-handed 310
Helix 23
23
B
116 129Right-handed alpha
Helix 24
24
B
131 133Right-handed 310
Helix 25
25
B
149 163Right-handed alpha
Helix 26
26
B
169 171Right-handed 310
Helix 27
27
B
178 180Right-handed 310
Helix 28
28
B
185 187Right-handed 310
Helix 29
29
B
189 204Right-handed alpha
Helix 30
30
B
221 232Right-handed alpha
Helix 31
31
B
256 266Right-handed alpha
Helix 32
32
B
280 285Right-handed alpha
Helix 33
33
B
323 332Right-handed alpha
Helix 34
34
B
339 342Right-handed alpha
Helix 35
35
B
345 359Right-handed alpha
Helix 36
36
B
365 389Right-handed alpha
Helix 37
37
B
394 412Right-handed alpha
Helix 38
38
C
4 19Right-handed alpha
Helix 39
39
C
24 29Right-handed alpha
Helix 40
40
C
79 96Right-handed alpha
Helix 41
41
C
111 113Right-handed 310
Helix 42
42
C
116 133Right-handed alpha
Helix 43
43
C
149 163Right-handed alpha
Helix 44
44
C
169 172Right-handed 310
Helix 45
45
C
178 180Right-handed 310
Helix 46
46
C
185 187Right-handed 310
Helix 47
47
C
189 204Right-handed alpha
Helix 48
48
C
221 232Right-handed alpha
Helix 49
49
C
256 266Right-handed alpha
Helix 50
50
C
280 284Right-handed alpha
Helix 51
51
C
302 305Right-handed alpha
Helix 52
52
C
323 332Right-handed alpha
Helix 53
53
C
339 342Right-handed alpha
Helix 54
54
C
345 359Right-handed alpha
Helix 55
55
C
365 389Right-handed alpha
Helix 56
56
C
394 413Right-handed alpha
Helix 57
57
D
4 19Right-handed alpha
Helix 58
58
D
24 31Right-handed alpha
Helix 59
59
D
79 96Right-handed alpha
Helix 60
60
D
111 113Right-handed 310
Helix 61
61
D
116 133Right-handed alpha
Helix 62
62
D
149 163Right-handed alpha
Helix 63
63
D
169 171Right-handed 310
Helix 64
64
D
178 180Right-handed 310
Helix 65
65
D
186 204Right-handed 310
Helix 66
66
D
221 232Right-handed alpha
Helix 67
67
D
256 266Right-handed alpha
Helix 68
68
D
280 284Right-handed alpha
Helix 69
69
D
302 305Right-handed alpha
Helix 70
70
D
323 332Right-handed alpha
Helix 71
71
D
339 342Right-handed alpha
Helix 72
72
D
345 359Right-handed alpha
Helix 73
73
D
365 389Right-handed alpha
Helix 74
74
D
394 412Right-handed alpha
Helix 75
75
E
4 19Right-handed alpha
Helix 76
76
E
24 30Right-handed alpha
Helix 77
77
E
79 96Right-handed alpha
Helix 78
78
E
111 113Right-handed 310
Helix 79
79
E
116 133Right-handed alpha
Helix 80
80
E
149 163Right-handed alpha
Helix 81
81
E
169 171Right-handed 310
Helix 82
82
E
178 180Right-handed 310
Helix 83
83
E
189 205Right-handed alpha
Helix 84
84
E
221 232Right-handed alpha
Helix 85
85
E
256 266Right-handed alpha
Helix 86
86
E
280 284Right-handed alpha
Helix 87
87
E
302 307Right-handed alpha
Helix 88
88
E
323 332Right-handed alpha
Helix 89
89
E
339 342Right-handed alpha
Helix 90
90
E
345 359Right-handed alpha
Helix 91
91
E
365 390Right-handed alpha
Helix 92
92
E
394 412Right-handed alpha
Helix 93
93
F
4 19Right-handed alpha
Helix 94
94
F
24 31Right-handed alpha
Helix 95
95
F
79 96Right-handed alpha
Helix 96
96
F
111 113Right-handed 310
Helix 97
97
F
116 129Right-handed alpha
Helix 98
98
F
131 133Right-handed 310
Helix 99
99
F
149 163Right-handed alpha
Helix 100
100
F
169 171Right-handed 310
Helix 101
101
F
178 180Right-handed 310
Helix 102
102
F
189 204Right-handed alpha
Helix 103
103
F
221 232Right-handed alpha
Helix 104
104
F
256 266Right-handed alpha
Helix 105
105
F
280 285Right-handed alpha
Helix 106
106
F
302 307Right-handed alpha
Helix 107
107
F
323 331Right-handed alpha
Helix 108
108
F
339 342Right-handed alpha
Helix 109
109
F
345 359Right-handed alpha
Helix 110
110
F
365 390Right-handed alpha
Helix 111
111
F
394 412Right-handed alpha
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There are 25 sheets in PDB entry 1BVU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 44first strand
Strand 2
A
50 61anti-parallel
Strand 3
A
100 108anti-parallel
Strand 4
A
66 71parallel
Strand 5
A
139 143parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
105 108parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 293first strand
Strand 2
A
213 217parallel
Strand 3
A
237 242parallel
Strand 4
A
247 249anti-parallel
Strand 5
A
276 278anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
335 337parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 44first strand
Strand 2
B
50 61anti-parallel
Strand 3
B
100 107anti-parallel
Strand 4
B
66 68parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 74first strand
Strand 2
B
105 108parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 293first strand
Strand 2
B
213 217parallel
Strand 3
B
237 242parallel
Strand 4
B
247 249anti-parallel
Strand 5
B
276 278anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 314first strand
Strand 2
B
335 337parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 44first strand
Strand 2
C
50 61anti-parallel
Strand 3
C
100 108anti-parallel
Strand 4
C
66 68parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 73first strand
Strand 2
C
105 107parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 217first strand
Strand 2
C
290 293parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 242first strand
Strand 2
C
247 249anti-parallel
Strand 3
C
276 278anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
312 314first strand
Strand 2
C
335 337parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 44first strand
Strand 2
D
50 61anti-parallel
Strand 3
D
102 108anti-parallel
Strand 4
D
71 74parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
247 249first strand
Strand 2
D
276 278anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
312 314first strand
Strand 2
D
335 337parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
213 215first strand
Strand 2
D
237 240parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 44first strand
Strand 2
E
50 61anti-parallel
Strand 3
E
100 108anti-parallel
Strand 4
E
66 68parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
71 74first strand
Strand 2
E
105 108parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
276 278first strand
Strand 2
E
247 249anti-parallel
Strand 3
E
237 242anti-parallel
Strand 4
E
213 217parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
312 314first strand
Strand 2
E
335 337parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
35 44first strand
Strand 2
F
50 61anti-parallel
Strand 3
F
100 107anti-parallel
Strand 4
F
66 68parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
71 73first strand
Strand 2
F
105 107parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
290 293first strand
Strand 2
F
213 217parallel
Strand 3
F
237 243parallel
Strand 4
F
246 249anti-parallel
Strand 5
F
276 278anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
312 314first strand
Strand 2
F
335 337parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il