Analysis of interatomic Contacts of Structural Units in PDB entry:
1BVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BVY entry

There are 3 chains in PDB entry 1BVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 20ILE 458
F
 ASN 479LEU 630
B
 ASN 21ILE 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 1BVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 36Right-handed alpha
Helix 2
2
A
55 61Right-handed alpha
Helix 3
3
A
73 82Right-handed alpha
Helix 4
4
A
86 88Right-handed 310
Helix 5
5
A
94 107Right-handed alpha
Helix 6
6
A
111 131Right-handed 310
Helix 7
7
A
141 158Right-handed alpha
Helix 8
8
A
164 166Right-handed 310
Helix 9
9
A
172 189Right-handed alpha
Helix 10
10
A
196 226Right-handed 310
Helix 11
11
A
233 239Right-handed alpha
Helix 12
12
A
251 282Right-handed alpha
Helix 13
13
A
284 297Right-handed alpha
Helix 14
14
A
305 310Right-handed alpha
Helix 15
15
A
312 325Right-handed alpha
Helix 16
16
A
357 362Right-handed alpha
Helix 17
17
A
364 367Right-handed alpha
Helix 18
18
A
376 379Right-handed 310
Helix 19
19
A
382 384Right-handed 310
Helix 20
20
A
396 398Right-handed 310
Helix 21
21
A
403 420Right-handed alpha
Helix 22
22
F
492 507Right-handed alpha
Helix 23
23
F
516 518Right-handed 310
Helix 24
24
F
545 552Right-handed alpha
Helix 25
25
F
575 577Right-handed 310
Helix 26
26
F
580 590Right-handed alpha
Helix 27
27
F
609 627Right-handed alpha
Helix 28
28
B
25 36Right-handed alpha
Helix 29
29
B
55 61Right-handed alpha
Helix 30
30
B
73 82Right-handed alpha
Helix 31
31
B
94 107Right-handed alpha
Helix 32
32
B
109 131Right-handed alpha
Helix 33
33
B
141 158Right-handed alpha
Helix 34
34
B
164 166Right-handed 310
Helix 35
35
B
172 189Right-handed alpha
Helix 36
36
B
196 225Right-handed 310
Helix 37
37
B
233 239Right-handed alpha
Helix 38
38
B
251 282Right-handed alpha
Helix 39
39
B
284 297Right-handed alpha
Helix 40
40
B
305 310Right-handed alpha
Helix 41
41
B
312 324Right-handed alpha
Helix 42
42
B
357 362Right-handed alpha
Helix 43
43
B
364 367Right-handed alpha
Helix 44
44
B
376 379Right-handed 310
Helix 45
45
B
382 384Right-handed 310
Helix 46
46
B
396 398Right-handed 310
Helix 47
47
B
403 420Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 1BVY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
352 356parallel
Strand 4
A
330 335anti-parallel
Strand 5
A
67 69anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
345 347anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 424first strand
Strand 2
A
447 450anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 435first strand
Strand 2
A
439 441anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
512 515first strand
Strand 2
F
482 487parallel
Strand 3
F
528 534parallel
Strand 4
F
564 570parallel
Strand 5
F
601 604parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 43first strand
Strand 2
B
48 52anti-parallel
Strand 3
B
352 356parallel
Strand 4
B
330 335anti-parallel
Strand 5
B
67 69anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
345 347anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 424first strand
Strand 2
B
447 450anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
433 435first strand
Strand 2
B
439 441anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il