Analysis of interatomic Contacts of Structural Units in PDB entry:
1BVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BVZ entry

There are 2 chains in PDB entry 1BVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 585
B
 MET 1ARG 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 1BVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 5Right-handed 310
Helix 2
2
A
105 108Right-handed alpha
Helix 3
3
A
126 130Right-handed 310
Helix 4
4
A
138 141Right-handed alpha
Helix 5
5
A
146 148Right-handed 310
Helix 6
6
A
172 185Right-handed alpha
Helix 7
7
A
219 232Right-handed alpha
Helix 8
8
A
250 261Right-handed alpha
Helix 9
9
A
265 267Right-handed 310
Helix 10
10
A
301 317Right-handed alpha
Helix 11
11
A
327 329Right-handed 310
Helix 12
12
A
332 345Right-handed alpha
Helix 13
13
A
374 384Right-handed alpha
Helix 14
14
A
391 404Right-handed alpha
Helix 15
15
A
407 412Right-handed alpha
Helix 16
16
A
425 428Right-handed alpha
Helix 17
17
A
433 443Right-handed alpha
Helix 18
18
A
456 458Right-handed 310
Helix 19
19
A
476 478Right-handed 310
Helix 20
20
A
481 496Right-handed alpha
Helix 21
21
A
498 502Right-handed alpha
Helix 22
22
B
3 5Right-handed 310
Helix 23
23
B
105 108Right-handed alpha
Helix 24
24
B
118 120Right-handed 310
Helix 25
25
B
127 129Right-handed 310
Helix 26
26
B
138 140Right-handed 310
Helix 27
27
B
172 185Right-handed alpha
Helix 28
28
B
219 232Right-handed alpha
Helix 29
29
B
250 261Right-handed alpha
Helix 30
30
B
265 267Right-handed 310
Helix 31
31
B
301 317Right-handed alpha
Helix 32
32
B
327 329Right-handed 310
Helix 33
33
B
332 345Right-handed alpha
Helix 34
34
B
360 362Right-handed 310
Helix 35
35
B
374 384Right-handed alpha
Helix 36
36
B
391 403Right-handed alpha
Helix 37
37
B
407 410Right-handed alpha
Helix 38
38
B
425 428Right-handed alpha
Helix 39
39
B
433 445Right-handed alpha
Helix 40
40
B
456 458Right-handed 310
Helix 41
41
B
476 478Right-handed 310
Helix 42
42
B
481 496Right-handed alpha
Helix 43
43
B
498 502Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 1BVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
22 30anti-parallel
Strand 3
A
66 74anti-parallel
Strand 4
A
58 62anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
80 87anti-parallel
Strand 4
A
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
93 97anti-parallel
Strand 3
A
100 102anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
321 324parallel
Strand 3
A
236 240parallel
Strand 4
A
189 192parallel
Strand 5
A
132 136parallel
Strand 6
A
449 453parallel
Strand 7
A
414 416parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 582first strand
Strand 2
A
526 533anti-parallel
Strand 3
A
516 523anti-parallel
Strand 4
A
504 511anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 544first strand
Strand 2
A
568 573anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
22 30anti-parallel
Strand 3
B
66 74anti-parallel
Strand 4
B
58 62anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
34 42anti-parallel
Strand 3
B
80 88anti-parallel
Strand 4
B
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
93 97anti-parallel
Strand 3
B
100 102anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 416first strand
Strand 2
B
449 453parallel
Strand 3
B
133 136parallel
Strand 4
B
189 192parallel
Strand 5
B
235 240parallel
Strand 6
B
321 324parallel
Strand 7
B
350 353parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
578 582first strand
Strand 2
B
526 533anti-parallel
Strand 3
B
516 523anti-parallel
Strand 4
B
504 510anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 543first strand
Strand 2
B
569 573anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
553 555first strand
Strand 2
B
559 561anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il