Analysis of interatomic Contacts of Structural Units in PDB entry:
1BW0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BW0 entry

There are 4 chains in PDB entry 1BW0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 4ALA 252
A
 ASN 254ALA 415
B
 TRP 4ALA 252
B
 ASN 254VAL 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 1BW0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed alpha
Helix 2
2
A
18 24Right-handed alpha
Helix 3
3
A
53 64Right-handed alpha
Helix 4
4
A
78 92Right-handed alpha
Helix 5
5
A
99 101Right-handed 310
Helix 6
6
A
104 106Right-handed 310
Helix 7
7
A
112 124Right-handed alpha
Helix 8
8
A
140 147Right-handed alpha
Helix 9
9
A
159 161Right-handed 310
Helix 10
10
A
167 173Right-handed alpha
Helix 11
11
A
196 209Right-handed alpha
Helix 12
12
A
258 260Right-handed 310
Helix 13
13
A
275 288Right-handed alpha
Helix 14
14
A
293 304Right-handed alpha
Helix 15
15
A
308 331Right-handed alpha
Helix 16
16
A
352 354Right-handed 310
Helix 17
17
A
361 372Right-handed alpha
Helix 18
18
A
379 382Right-handed 310
Helix 19
19
A
396 413Right-handed alpha
Helix 20
20
B
10 14Right-handed alpha
Helix 21
21
B
18 24Right-handed alpha
Helix 22
22
B
53 65Right-handed alpha
Helix 23
23
B
78 92Right-handed alpha
Helix 24
24
B
96 101Right-handed 310
Helix 25
25
B
104 106Right-handed 310
Helix 26
26
B
112 122Right-handed alpha
Helix 27
27
B
139 148Right-handed alpha
Helix 28
28
B
159 161Right-handed 310
Helix 29
29
B
167 173Right-handed alpha
Helix 30
30
B
196 209Right-handed alpha
Helix 31
31
B
258 260Right-handed 310
Helix 32
32
B
275 288Right-handed alpha
Helix 33
33
B
293 304Right-handed alpha
Helix 34
34
B
308 331Right-handed alpha
Helix 35
35
B
352 354Right-handed 310
Helix 36
36
B
361 372Right-handed alpha
Helix 37
37
B
379 382Right-handed 310
Helix 38
38
B
396 413Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1BW0. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
263 268anti-parallel
Strand 3
A
245 250anti-parallel
Strand 4
A
213 216parallel
Strand 5
A
178 184parallel
Strand 6
A
130 135parallel
Strand 7
A
151 156parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
345 350anti-parallel
Strand 3
A
387 391anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
263 268anti-parallel
Strand 3
B
245 250anti-parallel
Strand 4
B
213 216parallel
Strand 5
B
178 184parallel
Strand 6
B
130 135parallel
Strand 7
B
151 156parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 337first strand
Strand 2
B
345 350anti-parallel
Strand 3
B
387 391anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il