Analysis of interatomic Contacts of Structural Units in PDB entry:
1BYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BYD entry

There is 1 chain in PDB entry 1BYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLY 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1BYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A1
A
32 45Right-handed alpha
Helix 2
A2
A
70 81Right-handed alpha
Helix 3
A3
A
109 117Right-handed alpha
Helix 4
A4
A
150 170Right-handed alpha
Helix 5
A5
A
211 224Right-handed alpha
Helix 6
A6
A
258 284Right-handed alpha
Helix 7
A7
A
309 313Right-handed alpha
Helix 8
A8
A
325 334Right-handed alpha
Helix 9
A9
A
359 373Right-handed alpha
Helix 10
A10
A
387 399Right-handed alpha
Helix 11
A11
A
427 442Right-handed alpha
Helix 12
A12
A
469 475Right-handed alpha
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There is 1 sheet ( S1) in PDB entry 1BYD.

There are 8 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 20first strand
Strand 2
A
49 55parallel
Strand 3
A
85 91parallel
Strand 4
A
176 181parallel
Strand 5
A
290 296parallel
Strand 6
A
337 343parallel
Strand 7
A
375 381parallel
Strand 8
A
415 419parallel
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