Analysis of interatomic Contacts of Structural Units in PDB entry:
1BYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BYE entry

There are 4 chains in PDB entry 1BYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 213
B
 ALA 1ALA 213
C
 ALA 1ALA 213
D
 ALA 1ALA 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 1BYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 23Right-handed alpha
Helix 2
2
A
35 37Right-handed 310
Helix 3
3
A
39 41Right-handed 310
Helix 4
4
A
45 47Right-handed 310
Helix 5
5
A
67 78Right-handed alpha
Helix 6
6
A
80 82Right-handed 310
Helix 7
7
A
88 104Right-handed alpha
Helix 8
8
A
106 116Right-handed alpha
Helix 9
9
A
118 122Right-handed alpha
Helix 10
10
A
128 150Right-handed alpha
Helix 11
11
A
162 176Right-handed alpha
Helix 12
12
A
182 185Right-handed 310
Helix 13
13
A
187 197Right-handed alpha
Helix 14
14
A
200 209Right-handed alpha
Helix 15
15
B
12 24Right-handed alpha
Helix 16
16
B
39 41Right-handed 310
Helix 17
17
B
43 45Right-handed 310
Helix 18
18
B
67 78Right-handed alpha
Helix 19
19
B
80 82Right-handed 310
Helix 20
20
B
90 102Right-handed alpha
Helix 21
21
B
106 113Right-handed alpha
Helix 22
22
B
120 122Right-handed 310
Helix 23
23
B
128 151Right-handed alpha
Helix 24
24
B
162 167Right-handed alpha
Helix 25
25
B
169 173Right-handed alpha
Helix 26
26
B
182 184Right-handed 310
Helix 27
27
B
187 198Right-handed alpha
Helix 28
28
B
202 208Right-handed alpha
Helix 29
29
C
14 24Right-handed alpha
Helix 30
30
C
43 48Right-handed alpha
Helix 31
31
C
67 78Right-handed alpha
Helix 32
32
C
80 83Right-handed 310
Helix 33
33
C
88 90Right-handed 310
Helix 34
34
C
96 103Right-handed alpha
Helix 35
35
C
107 116Right-handed alpha
Helix 36
36
C
118 121Right-handed alpha
Helix 37
37
C
130 151Right-handed alpha
Helix 38
38
C
162 175Right-handed alpha
Helix 39
39
C
182 185Right-handed 310
Helix 40
40
C
187 198Right-handed alpha
Helix 41
41
C
202 208Right-handed alpha
Helix 42
42
D
17 23Right-handed alpha
Helix 43
43
D
39 41Right-handed 310
Helix 44
44
D
43 48Right-handed alpha
Helix 45
45
D
69 73Right-handed alpha
Helix 46
46
D
90 97Right-handed 310
Helix 47
47
D
106 115Right-handed 310
Helix 48
48
D
119 122Right-handed 310
Helix 49
49
D
129 151Right-handed alpha
Helix 50
50
D
162 176Right-handed alpha
Helix 51
51
D
179 181Right-handed 310
Helix 52
52
D
183 185Right-handed 310
Helix 53
53
D
187 198Right-handed alpha
Helix 54
54
D
202 207Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1BYE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
62 64anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
56 59anti-parallel
Strand 3
C
62 65anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
28 31parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 59first strand
Strand 2
D
62 65anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il