Analysis of interatomic Contacts of Structural Units in PDB entry:
1BYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BYG entry

There is 1 chain in PDB entry 1BYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 187LEU 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1BYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
192 194Right-handed 310
Helix 2
2
A
231 240Right-handed alpha
Helix 3
3
A
274 285Right-handed alpha
Helix 4
4
A
288 307Right-handed alpha
Helix 5
5
A
317 319Right-handed 310
Helix 6
6
A
355 360Right-handed alpha
Helix 7
7
A
365 380Right-handed alpha
Helix 8
8
A
392 401Right-handed 310
Helix 9
9
A
413 423Right-handed alpha
Helix 10
10
A
427 429Right-handed 310
Helix 11
11
A
433 446Right-handed alpha
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There are 3 sheets in PDB entry 1BYG. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
207 214anti-parallel
Strand 3
A
217 223anti-parallel
Strand 4
A
263 266anti-parallel
Strand 5
A
251 255anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 322first strand
Strand 2
A
328 330anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 200first strand
Strand 2
A
210 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il