Analysis of interatomic Contacts of Structural Units in PDB entry:
1BZY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BZY entry

There are 4 chains in PDB entry 1BZY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ALA 217
B
 SER 4ALA 217
C
 SER 4ALA 217
D
 SER 4ALA 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1BZY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 20Right-handed 310
Helix 2
2
A
25 27Right-handed 310
Helix 3
3
A
38 56Right-handed alpha
Helix 4
4
A
71 85Right-handed alpha
Helix 5
5
A
119 124Right-handed 310
Helix 6
6
A
140 152Right-handed alpha
Helix 7
7
A
209 214Right-handed alpha
Helix 8
8
B
18 20Right-handed 310
Helix 9
9
B
25 30Right-handed alpha
Helix 10
10
B
38 56Right-handed alpha
Helix 11
11
B
71 85Right-handed alpha
Helix 12
12
B
120 124Right-handed 310
Helix 13
13
B
140 152Right-handed alpha
Helix 14
14
B
209 214Right-handed alpha
Helix 15
15
C
18 20Right-handed 310
Helix 16
16
C
25 30Right-handed 310
Helix 17
17
C
38 56Right-handed alpha
Helix 18
18
C
71 85Right-handed alpha
Helix 19
19
C
120 124Right-handed 310
Helix 20
20
C
140 152Right-handed alpha
Helix 21
21
C
209 214Right-handed alpha
Helix 22
22
D
18 20Right-handed 310
Helix 23
23
D
25 30Right-handed 310
Helix 24
24
D
38 56Right-handed alpha
Helix 25
25
D
71 87Right-handed alpha
Helix 26
26
D
120 124Right-handed 310
Helix 27
27
D
140 152Right-handed alpha
Helix 28
28
D
209 214Right-handed alpha
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There are 12 sheets in PDB entry 1BZY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 161first strand
Strand 2
A
128 133parallel
Strand 3
A
61 67parallel
Strand 4
A
94 102parallel
Strand 5
A
114 117anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
180 182parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
205 207anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 100first strand
Strand 2
B
61 67parallel
Strand 3
B
128 133parallel
Strand 4
B
156 161parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
180 182parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
205 207anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 100first strand
Strand 2
C
61 67parallel
Strand 3
C
128 133parallel
Strand 4
C
156 161parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 166first strand
Strand 2
C
180 183parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 34first strand
Strand 2
C
205 207anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 100first strand
Strand 2
D
61 67parallel
Strand 3
D
128 133parallel
Strand 4
D
156 161parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
163 165first strand
Strand 2
D
180 182parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 34first strand
Strand 2
D
205 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il