Analysis of interatomic Contacts of Structural Units in PDB entry:
1C0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C0E entry

There are 2 chains in PDB entry 1C0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4ARG 157
B
 VAL 204ARG 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1C0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 33Right-handed alpha
Helix 2
2
A
35 37Right-handed 310
Helix 3
3
A
56 66Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
92 103Right-handed alpha
Helix 6
6
A
117 120Right-handed 310
Helix 7
7
A
134 154Right-handed alpha
Helix 8
8
B
217 232Right-handed alpha
Helix 9
9
B
235 237Right-handed 310
Helix 10
10
B
256 266Right-handed alpha
Helix 11
11
B
280 285Right-handed alpha
Helix 12
12
B
292 305Right-handed alpha
Helix 13
13
B
317 320Right-handed 310
Helix 14
14
B
334 357Right-handed alpha
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There are 2 sheets in PDB entry 1C0E. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
6 12parallel
Strand 3
A
87 90parallel
Strand 4
A
112 115parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 245first strand
Strand 2
B
206 212parallel
Strand 3
B
287 290parallel
Strand 4
B
312 315parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il