Analysis of interatomic Contacts of Structural Units in PDB entry:
1C0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C0M entry

There are 4 chains in PDB entry 1C0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 49ILE 269
B
 GLY 54ILE 269
C
 GLY 49THR 270
D
 GLY 54ILE 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1C0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 72Right-handed 310
Helix 2
2
A
97 113Right-handed alpha
Helix 3
3
A
123 128Right-handed alpha
Helix 4
4
A
128 139Right-handed alpha
Helix 5
5
A
153 174Right-handed alpha
Helix 6
6
A
181 183Right-handed 310
Helix 7
7
A
184 198Right-handed alpha
Helix 8
8
A
207 214Right-handed alpha
Helix 9
9
B
69 72Right-handed 310
Helix 10
10
B
97 113Right-handed alpha
Helix 11
11
B
123 128Right-handed alpha
Helix 12
12
B
128 139Right-handed alpha
Helix 13
13
B
149 154Right-handed alpha
Helix 14
14
B
153 174Right-handed alpha
Helix 15
15
B
181 199Right-handed alpha
Helix 16
16
B
207 214Right-handed alpha
Helix 17
17
C
69 72Right-handed 310
Helix 18
18
C
97 113Right-handed alpha
Helix 19
19
C
123 128Right-handed alpha
Helix 20
20
C
128 139Right-handed alpha
Helix 21
21
C
153 174Right-handed alpha
Helix 22
22
C
181 183Right-handed 310
Helix 23
23
C
184 198Right-handed alpha
Helix 24
24
C
207 214Right-handed alpha
Helix 25
25
D
69 72Right-handed 310
Helix 26
26
D
97 113Right-handed alpha
Helix 27
27
D
123 128Right-handed alpha
Helix 28
28
D
128 139Right-handed alpha
Helix 29
29
D
149 154Right-handed alpha
Helix 30
30
D
153 174Right-handed alpha
Helix 31
31
D
181 199Right-handed alpha
Helix 32
32
D
207 214Right-handed alpha
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There are 8 sheets in PDB entry 1C0M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
76 82anti-parallel
Strand 3
A
60 67anti-parallel
Strand 4
A
117 120parallel
Strand 5
A
141 144parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
233 242anti-parallel
Strand 4
A
223 227anti-parallel
Strand 5
A
265 267anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 93first strand
Strand 2
B
76 82anti-parallel
Strand 3
B
60 67anti-parallel
Strand 4
B
117 119parallel
Strand 5
B
141 143parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 261first strand
Strand 2
B
246 251anti-parallel
Strand 3
B
233 243anti-parallel
Strand 4
B
223 227anti-parallel
Strand 5
B
265 267anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 93first strand
Strand 2
C
76 82anti-parallel
Strand 3
C
60 67anti-parallel
Strand 4
C
117 120parallel
Strand 5
C
141 144parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 261first strand
Strand 2
C
246 251anti-parallel
Strand 3
C
233 242anti-parallel
Strand 4
C
223 227anti-parallel
Strand 5
C
265 267anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 93first strand
Strand 2
D
76 82anti-parallel
Strand 3
D
60 67anti-parallel
Strand 4
D
117 121parallel
Strand 5
D
141 145parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
257 261first strand
Strand 2
D
246 251anti-parallel
Strand 3
D
233 243anti-parallel
Strand 4
D
223 227anti-parallel
Strand 5
D
265 267anti-parallel
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