Analysis of interatomic Contacts of Structural Units in PDB entry:
1C0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C0P entry

There is 1 chain in PDB entry 1C0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 999GLY 1361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1C0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1013 1026Right-handed alpha
Helix 2
2
A
1047 1051Right-handed 310
Helix 3
3
A
1064 1082Right-handed alpha
Helix 4
4
A
1099 1107Right-handed 310
Helix 5
5
A
1119 1123Right-handed 310
Helix 6
6
A
1138 1153Right-handed alpha
Helix 7
7
A
1165 1168Right-handed 310
Helix 8
8
A
1179 1185Right-handed 310
Helix 9
9
A
1248 1263Right-handed alpha
Helix 10
10
A
1264 1267Right-handed 310
Helix 11
11
A
1271 1275Right-handed 310
Helix 12
12
A
1333 1335Right-handed 310
Helix 13
13
A
1336 1360Right-handed alpha
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There are 3 sheets in PDB entry 1C0P. Click on sheet of interest to get list of strands forming it: A, B, B1,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1159first strand
Strand 2
A
1029 1034parallel
Strand 3
A
1006 1010parallel
Strand 4
A
1174 1177parallel
Strand 5
A
1323 1331parallel
Strand 6
A
1293 1301anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1276 1288first strand
Strand 2
A
1194 1205anti-parallel
Strand 3
A
1231 1235anti-parallel
Strand 4
A
1222 1227anti-parallel
Strand 5
A
1212 1214anti-parallel
Strand 6
A
1088 1097parallel
Strand 7
A
1128 1136anti-parallel
Strand 8
A
1116 1117anti-parallel
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There are 3 strands in B1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1276 1288first strand
Strand 2
A
1194 1205anti-parallel
Strand 3
A
1239 1240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il