Analysis of interatomic Contacts of Structural Units in PDB entry:
1C0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C0T entry

There are 3 chains in PDB entry 1C0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4LEU 279
A
 LYS 281HIS 539
B
 GLU 6GLN 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1C0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
77 82Right-handed alpha
Helix 2
2
A
96 100Right-handed 310
Helix 3
3
A
114 118Right-handed 310
Helix 4
4
A
122 129Right-handed 310
Helix 5
5
A
155 175Right-handed alpha
Helix 6
6
A
194 212Right-handed alpha
Helix 7
7
A
254 269Right-handed alpha
Helix 8
8
A
296 310Right-handed alpha
Helix 9
9
A
363 384Right-handed alpha
Helix 10
10
A
394 405Right-handed alpha
Helix 11
11
A
473 488Right-handed alpha
Helix 12
12
A
499 508Right-handed alpha
Helix 13
13
A
515 528Right-handed alpha
Helix 14
14
B
27 44Right-handed alpha
Helix 15
15
B
77 83Right-handed alpha
Helix 16
16
B
99 103Right-handed 310
Helix 17
17
B
112 118Right-handed 310
Helix 18
18
B
124 129Right-handed 310
Helix 19
19
B
134 138Right-handed 310
Helix 20
20
B
154 160Right-handed alpha
Helix 21
21
B
160 168Right-handed alpha
Helix 22
22
B
170 175Right-handed alpha
Helix 23
23
B
253 271Right-handed alpha
Helix 24
24
B
276 282Right-handed alpha
Helix 25
25
B
296 310Right-handed alpha
Helix 26
26
B
363 384Right-handed alpha
Helix 27
27
B
394 406Right-handed alpha
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There are 11 sheets in PDB entry 1C0T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
74 75anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
179 183anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
232 234anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
292 293anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 354first strand
Strand 2
A
337 344anti-parallel
Strand 3
A
326 331anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
512 513anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 469first strand
Strand 2
A
453 459anti-parallel
Strand 3
A
438 446anti-parallel
Strand 4
A
492 497parallel
Strand 5
A
530 535parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
130 132anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
B
71 75anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 110first strand
Strand 2
B
186 234anti-parallel
Strand 3
B
180 183anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 355first strand
Strand 2
B
336 344anti-parallel
Strand 3
B
326 333anti-parallel
Strand 4
B
388 391parallel
Strand 5
B
413 416parallel
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