Analysis of interatomic Contacts of Structural Units in PDB entry:
1C0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C0W entry

There are 6 chains in PDB entry 1C0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 A 401 T 421
F
 A 501 T 521
A
 LYS 2ILE 223
B
 LYS 2LEU 226
C
 LYS 2ARG 222
D
 LYS 2ARG 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1C0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 22Right-handed alpha
Helix 2
2
A
26 35Right-handed alpha
Helix 3
3
A
37 51Right-handed alpha
Helix 4
4
A
65 89Right-handed alpha
Helix 5
5
A
93 105Right-handed alpha
Helix 6
6
A
109 120Right-handed alpha
Helix 7
7
A
134 139Right-handed alpha
Helix 8
8
A
169 175Right-handed alpha
Helix 9
9
A
175 184Right-handed alpha
Helix 10
10
A
214 219Right-handed 310
Helix 11
11
B
6 21Right-handed alpha
Helix 12
12
B
26 34Right-handed alpha
Helix 13
13
B
37 51Right-handed alpha
Helix 14
14
B
65 89Right-handed alpha
Helix 15
15
B
93 105Right-handed alpha
Helix 16
16
B
109 120Right-handed alpha
Helix 17
17
B
134 139Right-handed alpha
Helix 18
18
B
152 156Right-handed alpha
Helix 19
19
B
169 175Right-handed alpha
Helix 20
20
B
175 185Right-handed alpha
Helix 21
21
B
217 219Right-handed 310
Helix 22
22
C
6 21Right-handed alpha
Helix 23
23
C
26 34Right-handed alpha
Helix 24
24
C
37 51Right-handed alpha
Helix 25
25
C
65 89Right-handed alpha
Helix 26
26
C
93 105Right-handed alpha
Helix 27
27
C
109 120Right-handed alpha
Helix 28
28
C
169 175Right-handed alpha
Helix 29
29
C
175 184Right-handed alpha
Helix 30
30
C
214 219Right-handed 310
Helix 31
31
D
6 22Right-handed alpha
Helix 32
32
D
26 35Right-handed alpha
Helix 33
33
D
37 51Right-handed alpha
Helix 34
34
D
65 89Right-handed alpha
Helix 35
35
D
93 105Right-handed alpha
Helix 36
36
D
109 120Right-handed alpha
Helix 37
37
D
169 175Right-handed alpha
Helix 38
38
D
175 184Right-handed alpha
Helix 39
39
D
214 219Right-handed 310
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There are 8 sheets in PDB entry 1C0W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
62 64anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
221 222anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
62 64anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
221 223anti-parallel
Strand 3
B
161 168anti-parallel
Strand 4
B
192 198anti-parallel
Strand 5
B
201 205anti-parallel
Strand 6
B
210 212anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 56first strand
Strand 2
C
62 64anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
167 168first strand
Strand 2
C
221 222anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 56first strand
Strand 2
D
62 64anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
167 168first strand
Strand 2
D
221 222anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il