Analysis of interatomic Contacts of Structural Units in PDB entry:
1C6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C6V entry

There are 5 chains in PDB entry 1C6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 55GLN 213
B
 ASN 55GLU 207
C
 ASN 55GLU 207
D
 ASN 55GLU 207
X
 LYS 216ASP 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 1C6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 106Right-handed alpha
Helix 2
2
A
124 134Right-handed alpha
Helix 3
3
A
156 164Right-handed alpha
Helix 4
4
A
171 185Right-handed alpha
Helix 5
5
A
195 209Right-handed alpha
Helix 6
6
B
93 106Right-handed alpha
Helix 7
7
B
123 134Right-handed alpha
Helix 8
8
B
152 166Right-handed alpha
Helix 9
9
B
171 184Right-handed alpha
Helix 10
10
B
195 206Right-handed alpha
Helix 11
11
C
78 82Right-handed 310
Helix 12
12
C
93 106Right-handed alpha
Helix 13
13
C
123 134Right-handed alpha
Helix 14
14
C
153 166Right-handed alpha
Helix 15
15
C
167 169Right-handed 310
Helix 16
16
C
171 185Right-handed alpha
Helix 17
17
C
195 205Right-handed alpha
Helix 18
18
D
93 106Right-handed alpha
Helix 19
19
D
123 131Right-handed alpha
Helix 20
20
D
154 164Right-handed alpha
Helix 21
21
D
171 184Right-handed alpha
Helix 22
22
D
195 207Right-handed alpha
Helix 23
23
X
261 265Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 1C6V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 88first strand
Strand 2
A
71 77anti-parallel
Strand 3
A
60 68anti-parallel
Strand 4
A
112 114parallel
Strand 5
A
136 138parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
71 78anti-parallel
Strand 3
B
61 68anti-parallel
Strand 4
B
113 115parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 67first strand
Strand 2
C
72 77anti-parallel
Strand 3
C
86 88anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 68first strand
Strand 2
D
71 78anti-parallel
Strand 3
D
83 88anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
256 259first strand
Strand 2
X
250 253anti-parallel
Strand 3
X
239 241anti-parallel
Strand 4
X
223 225anti-parallel
Strand 5
X
267 269anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il