Analysis of interatomic Contacts of Structural Units in PDB entry:
1C7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C7J entry

There is 1 chain in PDB entry 1C7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1C7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 38Right-handed 310
Helix 2
2
A
67 72Right-handed alpha
Helix 3
3
A
115 119Right-handed 310
Helix 4
4
A
120 128Right-handed alpha
Helix 5
5
A
138 143Right-handed alpha
Helix 6
6
A
156 173Right-handed alpha
Helix 7
7
A
174 176Right-handed 310
Helix 8
8
A
189 199Right-handed alpha
Helix 9
9
A
201 205Right-handed 310
Helix 10
10
A
222 238Right-handed alpha
Helix 11
11
A
243 249Right-handed 310
Helix 12
12
A
251 266Right-handed alpha
Helix 13
13
A
287 294Right-handed alpha
Helix 14
14
A
309 314Right-handed 310
Helix 15
15
A
323 335Right-handed alpha
Helix 16
16
A
337 342Right-handed alpha
Helix 17
17
A
343 347Right-handed 310
Helix 18
18
A
350 363Right-handed alpha
Helix 19
19
A
363 375Right-handed alpha
Helix 20
20
A
402 408Right-handed alpha
Helix 21
21
A
411 418Right-handed alpha
Helix 22
22
A
422 443Right-handed alpha
Helix 23
23
A
476 484Right-handed alpha
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There are 2 sheets in PDB entry 1C7J. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
11 14anti-parallel
Strand 3
A
51 53parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
130 134anti-parallel
Strand 5
A
97 103parallel
Strand 6
A
178 188parallel
Strand 7
A
210 214parallel
Strand 8
A
302 307parallel
Strand 9
A
380 385parallel
Strand 10
A
461 465parallel
Strand 11
A
470 473anti-parallel
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