Analysis of interatomic Contacts of Structural Units in PDB entry:
1C8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C8F entry

There is 1 chain in PDB entry 1C8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 37TYR 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1C8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
86 91Right-handed alpha
Helix 2
2
A
95 99Right-handed 310
Helix 3
3
A
116 120Right-handed 310
Helix 4
4
A
122 132Right-handed alpha
Helix 5
5
A
187 192Right-handed 310
Helix 6
6
A
237 241Right-handed 310
Helix 7
7
A
245 250Right-handed alpha
Helix 8
8
A
281 285Right-handed 310
Helix 9
9
A
409 413Right-handed 310
Helix 10
10
A
425 427Right-handed 310
Helix 11
11
A
443 448Right-handed alpha
Helix 12
12
A
557 561Right-handed 310
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There are 8 sheets in PDB entry 1C8F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
58 72anti-parallel
Strand 3
A
523 539anti-parallel
Strand 4
A
133 154anti-parallel
Strand 5
A
273 274anti-parallel
Strand 6
A
133 154anti-parallel
Strand 7
A
266 267anti-parallel
Strand 8
A
133 154anti-parallel
Strand 9
A
261 262anti-parallel
Strand 10
A
133 154anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 212first strand
Strand 2
A
102 111anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
102 111anti-parallel
Strand 5
A
497 502anti-parallel
Strand 6
A
173 178anti-parallel
Strand 7
A
252 255anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
231 235anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 336first strand
Strand 2
A
455 456parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 348first strand
Strand 2
A
351 354anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
396 399anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 416first strand
Strand 2
A
429 430anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 472first strand
Strand 2
A
488 490parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il