Analysis of interatomic Contacts of Structural Units in PDB entry:
1C8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C8H entry

There is 1 chain in PDB entry 1C8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 37TYR 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1C8H. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
86 91Right-handed alpha
Helix 2
2
A
95 99Right-handed 310
Helix 3
3
A
116 121Right-handed alpha
Helix 4
4
A
122 132Right-handed alpha
Helix 5
5
A
187 192Right-handed 310
Helix 6
6
A
237 241Right-handed 310
Helix 7
7
A
245 250Right-handed alpha
Helix 8
8
A
281 285Right-handed 310
Helix 9
9
A
381 385Right-handed 310
Helix 10
10
A
445 447Right-handed 310
Helix 11
11
A
557 561Right-handed 310
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There are 12 sheets in PDB entry 1C8H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
164 167first strand
Strand 2
A
138 154anti-parallel
Strand 3
A
261 267anti-parallel
Strand 4
A
138 154anti-parallel
Strand 5
A
523 535anti-parallel
Strand 6
A
70 72anti-parallel
Strand 7
A
523 535anti-parallel
Strand 8
A
59 67anti-parallel
Strand 9
A
50 53anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
80 84first strand
Strand 2
A
102 106anti-parallel
Strand 3
A
210 211anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
206 207first strand
Strand 2
A
110 111anti-parallel
Strand 3
A
497 502anti-parallel
Strand 4
A
173 178anti-parallel
Strand 5
A
252 255anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
273 274first strand
Strand 2
A
133 136anti-parallel
Strand 3
A
538 539anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
215 218first strand
Strand 2
A
231 235anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
276 277first strand
Strand 2
A
579 580parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
335 336first strand
Strand 2
A
455 456parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
345 348first strand
Strand 2
A
351 354anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
377 380first strand
Strand 2
A
396 399anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
415 416first strand
Strand 2
A
429 430anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
435 436first strand
Strand 2
A
439 443anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
470 472first strand
Strand 2
A
488 490parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il