Analysis of interatomic Contacts of Structural Units in PDB entry:
1CB6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CB6 entry

There is 1 chain in PDB entry 1CB6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1001LYS 1691
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1CB6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
N1
A
1012 1031Right-handed alpha
Helix 2
N2
A
1041 1053Right-handed alpha
Helix 3
N3
A
1060 1069Right-handed alpha
Helix 4
N5
A
1121 1136Right-handed alpha
Helix 5
N6
A
1144 1153Right-handed alpha
Helix 6
N7
A
1190 1203Right-handed alpha
Helix 7
N8
A
1212 1218Right-handed alpha
Helix 8
N8A
A
1222 1227Right-handed 310
Helix 9
N9
A
1263 1279Right-handed alpha
Helix 10
N10
A
1315 1321Right-handed alpha
Helix 11
C1
A
1351 1365Right-handed alpha
Helix 12
C2
A
1376 1388Right-handed alpha
Helix 13
C3
A
1395 1407Right-handed alpha
Helix 14
C4
A
1449 1453Right-handed 310
Helix 15
C5
A
1465 1481Right-handed alpha
Helix 16
C6
A
1484 1488Right-handed 310
Helix 17
C7
A
1526 1539Right-handed alpha
Helix 18
C8
A
1546 1554Right-handed alpha
Helix 19
C8A
A
1567 1571Right-handed 310
Helix 20
C9
A
1605 1621Right-handed alpha
Helix 21
C10
A
1658 1664Right-handed alpha
Helix 22
C11
A
1664 1678Right-handed alpha
Helix 23
C12
A
1680 1691Right-handed alpha
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There are 6 sheets in PDB entry 1CB6. Click on sheet of interest to get list of strands forming it: BN1, N2A, N2B, BC1, C2A, C2B,

There are 6 strands in BN1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1032 1039first strand
Strand 2
A
1005 1010parallel
Strand 3
A
1054 1059parallel
Strand 4
A
1247 1258anti-parallel
Strand 5
A
1074 1082anti-parallel
Strand 6
A
1305 1310anti-parallel
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There are 5 strands in N2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1153 1158first strand
Strand 2
A
1112 1116parallel
Strand 3
A
1204 1211parallel
Strand 4
A
1090 1100anti-parallel
Strand 5
A
1226 1231anti-parallel
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There are 5 strands in N2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1153 1158first strand
Strand 2
A
1112 1116parallel
Strand 3
A
1204 1211parallel
Strand 4
A
1090 1100anti-parallel
Strand 5
A
1247 1258anti-parallel
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There are 6 strands in BC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1368 1374first strand
Strand 2
A
1344 1349parallel
Strand 3
A
1389 1394parallel
Strand 4
A
1591 1602anti-parallel
Strand 5
A
1407 1415anti-parallel
Strand 6
A
1648 1653anti-parallel
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There are 5 strands in C2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1489 1494first strand
Strand 2
A
1456 1460parallel
Strand 3
A
1540 1546parallel
Strand 4
A
1434 1443anti-parallel
Strand 5
A
1570 1575anti-parallel
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There are 5 strands in C2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1489 1494first strand
Strand 2
A
1456 1460parallel
Strand 3
A
1540 1546parallel
Strand 4
A
1434 1443anti-parallel
Strand 5
A
1591 1602anti-parallel
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