Analysis of interatomic Contacts of Structural Units in PDB entry:
1CC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CC0 entry

There are 4 chains in PDB entry 1CC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4CYS 190
E
 SER 24LYS 203
C
 ILE 4CYS 190
F
 SER 24LYS 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1CC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 27Right-handed alpha
Helix 2
2
A
65 73Right-handed 310
Helix 3
3
A
89 97Right-handed alpha
Helix 4
4
A
99 106Right-handed alpha
Helix 5
5
A
119 121Right-handed 310
Helix 6
6
A
125 134Right-handed alpha
Helix 7
7
A
141 151Right-handed alpha
Helix 8
8
A
167 179Right-handed alpha
Helix 9
9
E
95 98Right-handed 310
Helix 10
10
C
18 27Right-handed alpha
Helix 11
11
C
65 73Right-handed 310
Helix 12
12
C
89 97Right-handed alpha
Helix 13
13
C
99 106Right-handed alpha
Helix 14
14
C
119 121Right-handed 310
Helix 15
15
C
125 134Right-handed alpha
Helix 16
16
C
141 151Right-handed alpha
Helix 17
17
C
167 179Right-handed alpha
Helix 18
18
F
95 98Right-handed 310
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There are 6 sheets in PDB entry 1CC0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
111 117parallel
Strand 3
A
79 85parallel
Strand 4
A
5 12parallel
Strand 5
A
52 58parallel
Strand 6
A
43 47anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
87 89first strand
Strand 2
E
70 78anti-parallel
Strand 3
E
111 118anti-parallel
Strand 4
E
156 159anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
102 105first strand
Strand 2
E
190 199parallel
Strand 3
E
173 182anti-parallel
Strand 4
E
126 134anti-parallel
Strand 5
E
140 147anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 158first strand
Strand 2
C
111 117parallel
Strand 3
C
79 85parallel
Strand 4
C
5 12parallel
Strand 5
C
52 58parallel
Strand 6
C
43 47anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
87 89first strand
Strand 2
F
70 78anti-parallel
Strand 3
F
111 118anti-parallel
Strand 4
F
156 159anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
102 105first strand
Strand 2
F
190 199parallel
Strand 3
F
173 182anti-parallel
Strand 4
F
126 134anti-parallel
Strand 5
F
140 147anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il