Analysis of interatomic Contacts of Structural Units in PDB entry:
1CF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CF5 entry

There are 2 chains in PDB entry 1CF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1ASN 249
B
 ASP 1ASN 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1CF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
42 46Right-handed 310
Helix 3
3
A
88 94Right-handed alpha
Helix 4
4
A
108 117Right-handed alpha
Helix 5
5
A
119 123Right-handed 310
Helix 6
6
A
126 139Right-handed alpha
Helix 7
7
A
144 162Right-handed alpha
Helix 8
8
A
162 171Right-handed alpha
Helix 9
9
A
181 200Right-handed alpha
Helix 10
10
A
228 234Right-handed alpha
Helix 11
11
A
240 245Right-handed alpha
Helix 12
12
B
10 24Right-handed alpha
Helix 13
13
B
42 46Right-handed 310
Helix 14
14
B
88 94Right-handed alpha
Helix 15
15
B
108 117Right-handed alpha
Helix 16
16
B
119 123Right-handed 310
Helix 17
17
B
126 139Right-handed alpha
Helix 18
18
B
144 162Right-handed alpha
Helix 19
19
B
162 171Right-handed alpha
Helix 20
20
B
181 200Right-handed alpha
Helix 21
21
B
228 234Right-handed alpha
Helix 22
22
B
240 245Right-handed alpha
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There are 6 sheets in PDB entry 1CF5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
46 54parallel
Strand 3
A
57 66anti-parallel
Strand 4
A
68 76anti-parallel
Strand 5
A
79 84anti-parallel
Strand 6
A
99 103parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 215first strand
Strand 2
A
218 223anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
34 36anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
46 54parallel
Strand 3
B
57 66anti-parallel
Strand 4
B
68 76anti-parallel
Strand 5
B
79 84anti-parallel
Strand 6
B
99 103parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 215first strand
Strand 2
B
218 223anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
34 36anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il