Analysis of interatomic Contacts of Structural Units in PDB entry:
1CF9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1CF9 entry

There are 4 chains in PDB entry 1CF9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 27	ALA 753
B	ASP 27	ALA 753
C	ASP 27	ALA 753
D	ASP 27	ALA 753

There are 76 helices in PDB entry 1CF9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	A1	A	61	70	Right-handed alpha
Helix 2	A2	A	106	118	Right-handed alpha
Helix 3	A3	A	210	222	Right-handed alpha
Helix 4	A4	A	235	246	Right-handed alpha
Helix 5	A5	A	248	262	Right-handed alpha
Helix 6	A6	A	303	314	Right-handed alpha
Helix 7	A7	A	316	329	Right-handed alpha
Helix 8	A8	A	342	349	Right-handed alpha
Helix 9	A9	A	381	389	Right-handed alpha
Helix 10	A10	A	405	423	Right-handed alpha
Helix 11	A11	A	505	516	Right-handed alpha
Helix 12	A12	A	517	533	Right-handed alpha
Helix 13	A13	A	536	549	Right-handed alpha
Helix 14	A14	A	551	563	Right-handed alpha
Helix 15	A15	A	567	572	Right-handed alpha
Helix 16	A16	A	612	626	Right-handed alpha
Helix 17	A17	A	678	691	Right-handed alpha
Helix 18	A18	A	700	709	Right-handed alpha
Helix 19	A19	A	725	742	Right-handed alpha
Helix 20	B1	B	61	70	Right-handed alpha
Helix 21	B2	B	106	118	Right-handed alpha
Helix 22	B3	B	210	222	Right-handed alpha
Helix 23	B4	B	235	246	Right-handed alpha
Helix 24	B5	B	248	262	Right-handed alpha
Helix 25	B6	B	303	314	Right-handed alpha
Helix 26	B7	B	316	329	Right-handed alpha
Helix 27	B8	B	342	349	Right-handed alpha
Helix 28	B9	B	381	389	Right-handed alpha
Helix 29	B10	B	405	423	Right-handed alpha
Helix 30	B11	B	505	516	Right-handed alpha
Helix 31	B12	B	517	533	Right-handed alpha
Helix 32	B13	B	536	549	Right-handed alpha
Helix 33	B14	B	551	563	Right-handed alpha
Helix 34	B15	B	567	572	Right-handed alpha
Helix 35	B16	B	612	626	Right-handed alpha
Helix 36	B17	B	678	691	Right-handed alpha
Helix 37	B18	B	700	709	Right-handed alpha
Helix 38	B19	B	725	742	Right-handed alpha
Helix 39	C1	C	61	70	Right-handed alpha
Helix 40	C2	C	106	118	Right-handed alpha
Helix 41	C3	C	210	222	Right-handed alpha
Helix 42	C4	C	235	246	Right-handed alpha
Helix 43	C5	C	248	262	Right-handed alpha
Helix 44	C6	C	303	314	Right-handed alpha
Helix 45	C7	C	316	329	Right-handed alpha
Helix 46	C8	C	342	349	Right-handed alpha
Helix 47	C9	C	381	389	Right-handed alpha
Helix 48	C10	C	405	423	Right-handed alpha
Helix 49	C11	C	505	516	Right-handed alpha
Helix 50	C12	C	517	533	Right-handed alpha
Helix 51	C13	C	536	549	Right-handed alpha
Helix 52	C14	C	551	563	Right-handed alpha
Helix 53	C15	C	567	572	Right-handed alpha
Helix 54	C16	C	612	626	Right-handed alpha
Helix 55	C17	C	678	691	Right-handed alpha
Helix 56	C18	C	700	709	Right-handed alpha
Helix 57	C19	C	725	742	Right-handed alpha
Helix 58	D1	D	61	70	Right-handed alpha
Helix 59	D2	D	106	118	Right-handed alpha
Helix 60	D3	D	210	222	Right-handed alpha
Helix 61	D4	D	235	246	Right-handed alpha
Helix 62	D5	D	248	262	Right-handed alpha
Helix 63	D6	D	303	314	Right-handed alpha
Helix 64	D7	D	316	329	Right-handed alpha
Helix 65	D8	D	342	349	Right-handed alpha
Helix 66	D9	D	381	389	Right-handed alpha
Helix 67	D10	D	405	423	Right-handed alpha
Helix 68	D11	D	505	516	Right-handed alpha
Helix 69	D12	D	517	533	Right-handed alpha
Helix 70	D13	D	536	549	Right-handed alpha
Helix 71	D14	D	551	563	Right-handed alpha
Helix 72	D15	D	567	572	Right-handed alpha
Helix 73	D16	D	612	626	Right-handed alpha
Helix 74	D17	D	678	691	Right-handed alpha
Helix 75	D18	D	700	709	Right-handed alpha
Helix 76	D19	D	725	742	Right-handed alpha

There are 12 sheets in PDB entry 1CF9. Click on sheet of interest to get list of strands forming it: AS1, AS2, AS3, BS1, BS2, BS3, CS1, CS2, CS3, DS1, DS2, DS3,

There are 9 strands in AS1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	141	first strand
Strand 2	A	160	168	first strand
Strand 3	A	182	191	first strand
Strand 4	A	194	202	first strand
Strand 5	A	271	278	first strand
Strand 6	A	282	296	first strand
Strand 7	A	332	341	first strand
Strand 8	A	367	377	first strand
Strand 9	A	128	141	first strand

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There are 6 strands in AS2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	600	607	first strand
Strand 2	A	627	635	first strand
Strand 3	A	651	654	first strand
Strand 4	A	663	667	first strand
Strand 5	A	694	698	first strand
Strand 6	A	717	721	first strand

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There are 2 strands in AS3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	642	first strand
Strand 2	A	645	650	first strand

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There are 9 strands in BS1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	141	first strand
Strand 2	B	160	168	first strand
Strand 3	B	182	191	first strand
Strand 4	B	194	202	first strand
Strand 5	B	271	278	first strand
Strand 6	B	282	296	first strand
Strand 7	B	332	341	first strand
Strand 8	B	367	377	first strand
Strand 9	B	128	141	first strand

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There are 6 strands in BS2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	600	607	first strand
Strand 2	B	627	635	first strand
Strand 3	B	651	654	first strand
Strand 4	B	663	667	first strand
Strand 5	B	694	698	first strand
Strand 6	B	717	721	first strand

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There are 2 strands in BS3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	642	first strand
Strand 2	B	645	650	first strand

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There are 9 strands in CS1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	141	first strand
Strand 2	C	160	168	first strand
Strand 3	C	182	191	first strand
Strand 4	C	194	202	first strand
Strand 5	C	271	278	first strand
Strand 6	C	282	296	first strand
Strand 7	C	332	341	first strand
Strand 8	C	367	377	first strand
Strand 9	C	128	141	first strand

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There are 6 strands in CS2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	600	607	first strand
Strand 2	C	627	635	first strand
Strand 3	C	651	654	first strand
Strand 4	C	663	667	first strand
Strand 5	C	694	698	first strand
Strand 6	C	717	721	first strand

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There are 2 strands in CS3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	642	first strand
Strand 2	C	645	650	first strand

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There are 9 strands in DS1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	141	first strand
Strand 2	D	160	168	first strand
Strand 3	D	182	191	first strand
Strand 4	D	194	202	first strand
Strand 5	D	271	278	first strand
Strand 6	D	282	296	first strand
Strand 7	D	332	341	first strand
Strand 8	D	367	377	first strand
Strand 9	D	128	141	first strand

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There are 6 strands in DS2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	600	607	first strand
Strand 2	D	627	635	first strand
Strand 3	D	651	654	first strand
Strand 4	D	663	667	first strand
Strand 5	D	694	698	first strand
Strand 6	D	717	721	first strand

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There are 2 strands in DS3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	638	642	first strand
Strand 2	D	645	650	first strand

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1CF9

Analysis of interatomic Contacts of Structural Units in PDB entry:
1CF9