Analysis of interatomic Contacts of Structural Units in PDB entry:
1CFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CFM entry

There are 3 chains in PDB entry 1CFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1ARG 251
B
 TYR 1ARG 251
C
 TYR 1ARG 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1CFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 8Right-handed alpha
Helix 2
2
A
20 23Right-handed 310
Helix 3
3
A
86 88Right-handed 310
Helix 4
4
A
91 97Right-handed alpha
Helix 5
5
A
120 123Right-handed alpha
Helix 6
6
B
2 8Right-handed alpha
Helix 7
7
B
20 23Right-handed 310
Helix 8
8
B
86 88Right-handed 310
Helix 9
9
B
91 97Right-handed alpha
Helix 10
10
B
120 123Right-handed alpha
Helix 11
11
C
2 8Right-handed alpha
Helix 12
12
C
20 23Right-handed 310
Helix 13
13
C
86 88Right-handed 310
Helix 14
14
C
91 97Right-handed alpha
Helix 15
15
C
120 123Right-handed alpha
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There are 9 sheets in PDB entry 1CFM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
44 50anti-parallel
Strand 3
A
125 131anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
71 76anti-parallel
Strand 3
A
145 154anti-parallel
Strand 4
A
236 245anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 208first strand
Strand 2
A
192 197anti-parallel
Strand 3
A
178 184anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
44 50anti-parallel
Strand 3
B
125 131anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
71 76anti-parallel
Strand 3
B
145 154anti-parallel
Strand 4
B
236 245anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 208first strand
Strand 2
B
192 197anti-parallel
Strand 3
B
178 184anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 34first strand
Strand 2
C
44 50anti-parallel
Strand 3
C
125 131anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
236 247parallel
Strand 3
C
145 154anti-parallel
Strand 4
C
71 76anti-parallel
Strand 5
C
112 115anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
203 208first strand
Strand 2
C
192 198anti-parallel
Strand 3
C
177 184anti-parallel
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