Analysis of interatomic Contacts of Structural Units in PDB entry:
1CGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CGJ entry

There are 2 chains in PDB entry 1CGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 CYS 1ASN 245
I
 ASP 1CYS 56
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1CGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1A
E
165 175Right-handed alpha
Helix 2
H2A
E
231 244Right-handed alpha
Helix 3
H1I
I
33 45Right-handed alpha
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There are 3 sheets in PDB entry 1CGJ. Click on sheet of interest to get list of strands forming it: AA, BA, AI,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
30 35first strand
Strand 2
E
39 47anti-parallel
Strand 3
E
50 55anti-parallel
Strand 4
E
103 109anti-parallel
Strand 5
E
80 91anti-parallel
Strand 6
E
64 68anti-parallel
Strand 7
E
30 35anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
134 141first strand
Strand 2
E
155 164anti-parallel
Strand 3
E
180 185anti-parallel
Strand 4
E
224 230anti-parallel
Strand 5
E
206 215anti-parallel
Strand 6
E
197 203anti-parallel
Strand 7
E
134 141anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
23 25first strand
Strand 2
I
29 31anti-parallel
Strand 3
I
50 53anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il