Analysis of interatomic Contacts of Structural Units in PDB entry:
1CID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CID entry

There is 1 chain in PDB entry 1CID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1VAL 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 1CID. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 83Right-handed 310
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There are 4 sheets in PDB entry 1CID. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
26 34anti-parallel
Strand 4
A
85 92anti-parallel
Strand 5
A
97 110anti-parallel
Strand 6
A
4 8parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
26 34anti-parallel
Strand 4
A
85 92anti-parallel
Strand 5
A
97 110anti-parallel
Strand 6
A
116 122anti-parallel
Strand 7
A
148 152anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
73 76anti-parallel
Strand 3
A
65 66anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
129 135anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
168 176anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il