Analysis of interatomic Contacts of Structural Units in PDB entry:
1CJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CJ0 entry

There are 2 chains in PDB entry 1CJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP -8PHE 4180
B
 TRP -8PHE 4180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 1CJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 11Right-handed alpha
Helix 2
2
A
13 28Right-handed alpha
Helix 3
3
A
41 48Right-handed alpha
Helix 4
4
A
50 53Right-handed 310
Helix 5
5
A
71 85Right-handed alpha
Helix 6
6
A
98 109Right-handed alpha
Helix 7
7
A
127 129Right-handed 310
Helix 8
8
A
137 140Right-handed alpha
Helix 9
9
A
155 165Right-handed alpha
Helix 10
10
A
183 193Right-handed alpha
Helix 11
11
A
205 210Right-handed alpha
Helix 12
12
A
216 218Right-handed 310
Helix 13
13
A
2501 256Right-handed alpha
Helix 14
14
A
266 280Right-handed alpha
Helix 15
15
A
282 305Right-handed alpha
Helix 16
16
A
323 326Right-handed 310
Helix 17
17
A
330 339Right-handed alpha
Helix 18
18
A
367 372Right-handed alpha
Helix 19
19
A
3742 3943Right-handed alpha
Helix 20
20
A
399 404Right-handed alpha
Helix 21
21
A
4042 4181Right-handed alpha
Helix 22
22
B
6 11Right-handed alpha
Helix 23
23
B
13 28Right-handed alpha
Helix 24
24
B
41 48Right-handed alpha
Helix 25
25
B
50 53Right-handed 310
Helix 26
26
B
69 85Right-handed alpha
Helix 27
27
B
98 109Right-handed alpha
Helix 28
28
B
121 123Right-handed 310
Helix 29
29
B
127 129Right-handed 310
Helix 30
30
B
138 140Right-handed alpha
Helix 31
31
B
155 165Right-handed alpha
Helix 32
32
B
183 193Right-handed alpha
Helix 33
33
B
205 210Right-handed alpha
Helix 34
34
B
216 218Right-handed 310
Helix 35
35
B
2501 256Right-handed alpha
Helix 36
36
B
266 280Right-handed alpha
Helix 37
37
B
282 305Right-handed alpha
Helix 38
38
B
323 326Right-handed 310
Helix 39
39
B
330 339Right-handed alpha
Helix 40
40
B
367 372Right-handed alpha
Helix 41
41
B
3742 3943Right-handed alpha
Helix 42
42
B
399 404Right-handed alpha
Helix 43
43
B
4042 4181Right-handed alpha
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There are 6 sheets in PDB entry 1CJ0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
237 242anti-parallel
Strand 3
A
222 226anti-parallel
Strand 4
A
196 200parallel
Strand 5
A
169 172parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
141 145parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 322first strand
Strand 2
A
361 365anti-parallel
Strand 3
A
345 347anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
237 242anti-parallel
Strand 3
B
222 226anti-parallel
Strand 4
B
196 200parallel
Strand 5
B
169 172parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 119first strand
Strand 2
B
141 145parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 322first strand
Strand 2
B
361 365anti-parallel
Strand 3
B
345 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il