Analysis of interatomic Contacts of Structural Units in PDB entry:
1CJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CJB entry

There are 4 chains in PDB entry 1CJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2THR 229
B
 PRO 2THR 229
C
 PRO 2LEU 231
D
 PRO 2THR 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1CJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 29Right-handed 310
Helix 2
2
A
37 39Right-handed 310
Helix 3
3
A
47 65Right-handed alpha
Helix 4
4
A
80 97Right-handed alpha
Helix 5
5
A
132 135Right-handed 310
Helix 6
6
A
151 163Right-handed alpha
Helix 7
7
A
220 225Right-handed alpha
Helix 8
8
B
27 29Right-handed 310
Helix 9
9
B
37 39Right-handed 310
Helix 10
10
B
47 65Right-handed alpha
Helix 11
11
B
80 97Right-handed alpha
Helix 12
12
B
133 135Right-handed 310
Helix 13
13
B
151 163Right-handed alpha
Helix 14
14
B
220 225Right-handed alpha
Helix 15
15
C
27 29Right-handed 310
Helix 16
16
C
34 39Right-handed 310
Helix 17
17
C
47 65Right-handed alpha
Helix 18
18
C
80 96Right-handed alpha
Helix 19
19
C
132 135Right-handed 310
Helix 20
20
C
151 163Right-handed alpha
Helix 21
21
C
220 225Right-handed alpha
Helix 22
22
D
34 39Right-handed 310
Helix 23
23
D
47 65Right-handed alpha
Helix 24
24
D
80 96Right-handed alpha
Helix 25
25
D
132 135Right-handed 310
Helix 26
26
D
151 163Right-handed alpha
Helix 27
27
D
220 225Right-handed alpha
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There are 12 sheets in PDB entry 1CJB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 172first strand
Strand 2
A
139 144parallel
Strand 3
A
70 76parallel
Strand 4
A
106 114parallel
Strand 5
A
126 129anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
191 193parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
216 218anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 112first strand
Strand 2
B
70 76parallel
Strand 3
B
139 144parallel
Strand 4
B
167 172parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
191 193parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
216 218anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 112first strand
Strand 2
C
70 76parallel
Strand 3
C
139 144parallel
Strand 4
C
167 172parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
174 176first strand
Strand 2
C
191 193parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 43first strand
Strand 2
C
216 218anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
167 172first strand
Strand 2
D
139 144parallel
Strand 3
D
70 76parallel
Strand 4
D
106 114parallel
Strand 5
D
126 129anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
174 176first strand
Strand 2
D
191 193parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 43first strand
Strand 2
D
216 218anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il