Analysis of interatomic Contacts of Structural Units in PDB entry:
1CJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CJC entry

There is 1 chain in PDB entry 1CJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6HIS 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1CJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 28Right-handed alpha
Helix 2
2
A
45 49Right-handed 310
Helix 3
3
A
56 69Right-handed 310
Helix 4
4
A
88 94Right-handed alpha
Helix 5
5
A
123 130Right-handed alpha
Helix 6
6
A
134 136Right-handed 310
Helix 7
7
A
155 165Right-handed alpha
Helix 8
8
A
168 171Right-handed 310
Helix 9
9
A
178 185Right-handed alpha
Helix 10
10
A
200 202Right-handed 310
Helix 11
11
A
207 214Right-handed alpha
Helix 12
12
A
225 228Right-handed 310
Helix 13
13
A
231 235Right-handed alpha
Helix 14
14
A
240 254Right-handed alpha
Helix 15
15
A
259 267Right-handed alpha
Helix 16
16
A
306 308Right-handed 310
Helix 17
17
A
366 370Right-handed 310
Helix 18
18
A
376 396Right-handed alpha
Helix 19
19
A
406 417Right-handed 310
Helix 20
20
A
424 441Right-handed alpha
Helix 21
21
A
451 457Right-handed alpha
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There are 4 sheets in PDB entry 1CJC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 364first strand
Strand 2
A
97 100parallel
Strand 3
A
8 12parallel
Strand 4
A
33 37parallel
Strand 5
A
74 77parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
324 327parallel
Strand 3
A
147 151parallel
Strand 4
A
191 195parallel
Strand 5
A
270 275parallel
Strand 6
A
219 222parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 321first strand
Strand 2
A
294 299anti-parallel
Strand 3
A
278 284anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
310 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il