Analysis of interatomic Contacts of Structural Units in PDB entry:
1CJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CJD entry

There are 3 chains in PDB entry 1CJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 15ARG 383
B
 ALA 13THR 384
C
 ARG 16THR 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1CJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 34Right-handed alpha
Helix 2
2
A
91 94Right-handed 310
Helix 3
3
A
114 125Right-handed alpha
Helix 4
4
A
220 222Right-handed 310
Helix 5
5
A
251 255Right-handed alpha
Helix 6
6
A
321 332Right-handed alpha
Helix 7
7
A
352 355Right-handed alpha
Helix 8
8
B
15 34Right-handed alpha
Helix 9
9
B
91 94Right-handed 310
Helix 10
10
B
114 125Right-handed alpha
Helix 11
11
B
220 222Right-handed 310
Helix 12
12
B
251 255Right-handed alpha
Helix 13
13
B
321 332Right-handed alpha
Helix 14
14
C
17 34Right-handed alpha
Helix 15
15
C
91 94Right-handed 310
Helix 16
16
C
114 125Right-handed alpha
Helix 17
17
C
199 202Right-handed alpha
Helix 18
18
C
220 222Right-handed 310
Helix 19
19
C
253 255Right-handed 310
Helix 20
20
C
321 332Right-handed alpha
Helix 21
21
C
352 354Right-handed 310
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There are 15 sheets in PDB entry 1CJD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
96 102anti-parallel
Strand 4
A
111 113anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 169first strand
Strand 2
A
67 78anti-parallel
Strand 3
A
223 225anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 265first strand
Strand 2
A
371 382anti-parallel
Strand 3
A
283 293anti-parallel
Strand 4
A
340 344anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 277first strand
Strand 2
A
358 364anti-parallel
Strand 3
A
303 310anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 47first strand
Strand 2
A
227 238anti-parallel
Strand 3
A
64 75anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
191 196anti-parallel
Strand 3
B
96 102anti-parallel
Strand 4
B
111 113anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 169first strand
Strand 2
B
67 78anti-parallel
Strand 3
B
223 225anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 266first strand
Strand 2
B
371 382anti-parallel
Strand 3
B
283 293anti-parallel
Strand 4
B
340 344anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 277first strand
Strand 2
B
358 364anti-parallel
Strand 3
B
303 310anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 47first strand
Strand 2
B
227 238anti-parallel
Strand 3
B
64 75anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 57first strand
Strand 2
C
191 196anti-parallel
Strand 3
C
96 102anti-parallel
Strand 4
C
111 113anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 169first strand
Strand 2
C
67 78anti-parallel
Strand 3
C
223 225anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
256 266first strand
Strand 2
C
371 382anti-parallel
Strand 3
C
283 293anti-parallel
Strand 4
C
340 344anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 277first strand
Strand 2
C
358 364anti-parallel
Strand 3
C
303 310anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 47first strand
Strand 2
C
227 238anti-parallel
Strand 3
C
64 75anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il