Analysis of interatomic Contacts of Structural Units in PDB entry:
1CKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CKO entry

There is 1 chain in PDB entry 1CKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 11PHE 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1CKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 47Right-handed alpha
Helix 2
2
A
66 74Right-handed 310
Helix 3
3
A
122 124Right-handed 310
Helix 4
4
A
161 171Right-handed alpha
Helix 5
5
A
196 208Right-handed alpha
Helix 6
6
A
304 316Right-handed alpha
Helix 7
7
A
320 323Right-handed alpha
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There are 5 sheets in PDB entry 1CKO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 21first strand
Strand 2
A
24 31anti-parallel
Strand 3
A
110 112anti-parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
86 95anti-parallel
Strand 6
A
126 135anti-parallel
Strand 7
A
140 145anti-parallel
Strand 8
A
184 187parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
215 219anti-parallel
Strand 3
A
232 235anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 246first strand
Strand 2
A
279 285anti-parallel
Strand 3
A
288 294anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
147 150anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 258first strand
Strand 2
A
263 269anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il