Analysis of interatomic Contacts of Structural Units in PDB entry:
1CM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CM0 entry

There are 2 chains in PDB entry 1CM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 492ARG 653
A
 LYS 492ILE 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1CM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
509 525Right-handed alpha
Helix 2
2
B
531 538Right-handed alpha
Helix 3
3
B
578 580Right-handed 310
Helix 4
4
B
585 599Right-handed alpha
Helix 5
5
B
614 620Right-handed alpha
Helix 6
6
B
630 633Right-handed alpha
Helix 7
7
A
509 525Right-handed alpha
Helix 8
8
A
531 538Right-handed alpha
Helix 9
9
A
578 580Right-handed 310
Helix 10
10
A
585 600Right-handed alpha
Helix 11
11
A
614 620Right-handed alpha
Helix 12
12
A
630 633Right-handed alpha
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There are 4 sheets in PDB entry 1CM0. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
494 500first strand
Strand 2
B
543 550anti-parallel
Strand 3
B
553 563anti-parallel
Strand 4
B
568 576anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
604 609first strand
Strand 2
B
644 649anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 499first strand
Strand 2
A
544 550anti-parallel
Strand 3
A
553 563anti-parallel
Strand 4
A
568 576anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
604 609first strand
Strand 2
A
644 649anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il