Analysis of interatomic Contacts of Structural Units in PDB entry:
1CM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CM5 entry

There are 2 chains in PDB entry 1CM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1MET 759
B
 SER 1MET 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 72 helices in PDB entry 1CM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 11Right-handed alpha
Helix 2
2
A
17 21Right-handed 310
Helix 3
3
A
24 33Right-handed alpha
Helix 4
4
A
47 68Right-handed alpha
Helix 5
5
A
110 113Right-handed 310
Helix 6
6
A
114 125Right-handed alpha
Helix 7
7
A
130 140Right-handed alpha
Helix 8
8
A
143 152Right-handed alpha
Helix 9
9
A
153 162Right-handed alpha
Helix 10
10
A
181 188Right-handed alpha
Helix 11
11
A
187 202Right-handed alpha
Helix 12
12
A
203 209Right-handed alpha
Helix 13
13
A
212 239Right-handed alpha
Helix 14
14
A
250 269Right-handed alpha
Helix 15
15
A
279 293Right-handed alpha
Helix 16
16
A
297 313Right-handed alpha
Helix 17
17
A
320 327Right-handed alpha
Helix 18
18
A
350 358Right-handed alpha
Helix 19
19
A
358 363Right-handed alpha
Helix 20
20
A
380 395Right-handed alpha
Helix 21
21
A
402 410Right-handed alpha
Helix 22
22
A
438 447Right-handed alpha
Helix 23
23
A
471 505Right-handed alpha
Helix 24
24
A
507 512Right-handed alpha
Helix 25
25
A
528 542Right-handed alpha
Helix 26
26
A
570 589Right-handed alpha
Helix 27
27
A
593 597Right-handed 310
Helix 28
28
A
607 616Right-handed alpha
Helix 29
29
A
643 654Right-handed alpha
Helix 30
30
A
655 659Right-handed 310
Helix 31
31
A
670 675Right-handed alpha
Helix 32
32
A
677 694Right-handed alpha
Helix 33
33
A
711 721Right-handed alpha
Helix 34
34
A
722 725Right-handed 310
Helix 35
35
A
740 742Right-handed 310
Helix 36
36
A
743 752Right-handed alpha
Helix 37
37
B
4 11Right-handed alpha
Helix 38
38
B
17 21Right-handed 310
Helix 39
39
B
24 33Right-handed alpha
Helix 40
40
B
47 68Right-handed alpha
Helix 41
41
B
110 113Right-handed 310
Helix 42
42
B
114 125Right-handed alpha
Helix 43
43
B
130 140Right-handed alpha
Helix 44
44
B
143 152Right-handed alpha
Helix 45
45
B
153 162Right-handed alpha
Helix 46
46
B
181 188Right-handed alpha
Helix 47
47
B
187 202Right-handed alpha
Helix 48
48
B
203 210Right-handed alpha
Helix 49
49
B
212 239Right-handed alpha
Helix 50
50
B
250 269Right-handed alpha
Helix 51
51
B
279 293Right-handed alpha
Helix 52
52
B
297 313Right-handed alpha
Helix 53
53
B
320 327Right-handed alpha
Helix 54
54
B
350 358Right-handed alpha
Helix 55
55
B
358 363Right-handed alpha
Helix 56
56
B
380 395Right-handed alpha
Helix 57
57
B
402 410Right-handed alpha
Helix 58
58
B
438 447Right-handed alpha
Helix 59
59
B
471 505Right-handed alpha
Helix 60
60
B
507 512Right-handed alpha
Helix 61
61
B
528 541Right-handed alpha
Helix 62
62
B
570 589Right-handed alpha
Helix 63
63
B
593 597Right-handed 310
Helix 64
64
B
607 616Right-handed alpha
Helix 65
65
B
643 654Right-handed alpha
Helix 66
66
B
655 659Right-handed 310
Helix 67
67
B
670 675Right-handed alpha
Helix 68
68
B
677 694Right-handed alpha
Helix 69
69
B
711 721Right-handed alpha
Helix 70
70
B
722 725Right-handed 310
Helix 71
71
B
740 742Right-handed 310
Helix 72
72
B
743 752Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 1CM5. Click on sheet of interest to get list of strands forming it: A, B, C, D, D1, E, F, G, H, I, J, J1, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 78first strand
Strand 2
A
106 109parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 339first strand
Strand 2
A
370 375parallel
Strand 3
A
398 401parallel
Strand 4
A
704 709anti-parallel
Strand 5
A
666 669parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 417first strand
Strand 2
A
421 424anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 663first strand
Strand 2
A
598 603parallel
Strand 3
A
519 527parallel
Strand 4
A
428 431parallel
Back to list of sheets
Back to top of page

There are 4 strands in D1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 663first strand
Strand 2
A
598 603parallel
Strand 3
A
519 527parallel
Strand 4
A
435 437parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 548first strand
Strand 2
A
554 560anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
729 731first strand
Strand 2
A
736 738anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 78first strand
Strand 2
B
106 109parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 339first strand
Strand 2
B
370 375parallel
Strand 3
B
398 401parallel
Strand 4
B
704 709anti-parallel
Strand 5
B
666 669parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 417first strand
Strand 2
B
421 424anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
598 602first strand
Strand 2
B
519 527parallel
Strand 3
B
428 431parallel
Back to list of sheets
Back to top of page

There are 3 strands in J1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
598 602first strand
Strand 2
B
519 527parallel
Strand 3
B
435 437parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
543 548first strand
Strand 2
B
554 560anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
729 731first strand
Strand 2
B
736 738anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il