Analysis of interatomic Contacts of Structural Units in PDB entry:
1CM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CM7 entry

There are 2 chains in PDB entry 1CM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 363
B
 MET 1VAL 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1CM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 34Right-handed alpha
Helix 2
2
A
47 53Right-handed alpha
Helix 3
3
A
59 66Right-handed alpha
Helix 4
4
A
90 102Right-handed alpha
Helix 5
5
A
125 130Right-handed alpha
Helix 6
6
A
143 145Right-handed 310
Helix 7
7
A
156 158Right-handed 310
Helix 8
8
A
169 184Right-handed alpha
Helix 9
9
A
200 215Right-handed alpha
Helix 10
10
A
226 235Right-handed alpha
Helix 11
11
A
237 239Right-handed 310
Helix 12
12
A
247 261Right-handed alpha
Helix 13
13
A
288 290Right-handed 310
Helix 14
14
A
299 311Right-handed alpha
Helix 15
15
A
316 331Right-handed alpha
Helix 16
16
A
348 359Right-handed alpha
Helix 17
17
B
16 33Right-handed alpha
Helix 18
18
B
46 53Right-handed alpha
Helix 19
19
B
59 66Right-handed alpha
Helix 20
20
B
86 88Right-handed 310
Helix 21
21
B
90 102Right-handed alpha
Helix 22
22
B
115 120Right-handed 310
Helix 23
23
B
125 130Right-handed alpha
Helix 24
24
B
143 145Right-handed 310
Helix 25
25
B
156 158Right-handed 310
Helix 26
26
B
169 185Right-handed alpha
Helix 27
27
B
200 215Right-handed alpha
Helix 28
28
B
226 235Right-handed alpha
Helix 29
29
B
237 239Right-handed 310
Helix 30
30
B
247 261Right-handed alpha
Helix 31
31
B
264 266Right-handed 310
Helix 32
32
B
299 311Right-handed alpha
Helix 33
33
B
316 331Right-handed alpha
Helix 34
34
B
348 360Right-handed alpha
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There are 6 sheets in PDB entry 1CM7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
3 10parallel
Strand 3
A
37 42parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 282first strand
Strand 2
A
268 272anti-parallel
Strand 3
A
106 112anti-parallel
Strand 4
A
133 139anti-parallel
Strand 5
A
242 245parallel
Strand 6
A
189 194parallel
Strand 7
A
220 225parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
160 162anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
5 10parallel
Strand 3
B
70 73parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 282first strand
Strand 2
B
268 272anti-parallel
Strand 3
B
106 112anti-parallel
Strand 4
B
133 139anti-parallel
Strand 5
B
242 245parallel
Strand 6
B
189 194parallel
Strand 7
B
220 225parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 153first strand
Strand 2
B
160 162anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il