Analysis of interatomic Contacts of Structural Units in PDB entry:
1CMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CMJ entry

There is 1 chain in PDB entry 1CMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5PHE 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 1CMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 28Right-handed alpha
Helix 2
2
A
48 56Right-handed alpha
Helix 3
3
A
74 81Right-handed alpha
Helix 4
4
A
86 88Right-handed 310
Helix 5
5
A
93 105Right-handed alpha
Helix 6
6
A
107 130Right-handed alpha
Helix 7
7
A
140 143Right-handed alpha
Helix 8
8
A
145 157Right-handed alpha
Helix 9
9
A
161 175Right-handed 310
Helix 10
10
A
181 204Right-handed alpha
Helix 11
11
A
210 217Right-handed alpha
Helix 12
12
A
226 238Right-handed alpha
Helix 13
13
A
241 257Right-handed alpha
Helix 14
14
A
259 267Right-handed alpha
Helix 15
15
A
269 282Right-handed 310
Helix 16
16
A
315 320Right-handed alpha
Helix 17
17
A
355 366Right-handed alpha
Helix 18
18
A
369 372Right-handed alpha
Helix 19
19
A
382 384Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 1CMJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
41 45anti-parallel
Strand 3
A
310 313parallel
Strand 4
A
291 293anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
303 305anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il