Analysis of interatomic Contacts of Structural Units in PDB entry:
1CMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CMS entry

There is 1 chain in PDB entry 1CMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ILE 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1CMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
49 54Right-handed alpha
Helix 2
H2
A
112 116Right-handed alpha
Helix 3
H3
A
138 144Right-handed alpha
Helix 4
H4
A
226 236Right-handed alpha
Helix 5
H5
A
271 275Right-handed alpha
Helix 6
H6
A
300 305Right-handed alpha
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There are 8 sheets in PDB entry 1CMS. Click on sheet of interest to get list of strands forming it: S1, S2, S3, S4, S5, S6, S7, S8,

There are 6 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
165 168anti-parallel
Strand 3
A
152 156anti-parallel
Strand 4
A
306 311anti-parallel
Strand 5
A
316 322anti-parallel
Strand 6
A
176 184anti-parallel
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There are 4 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
18 22anti-parallel
Strand 3
A
90 93anti-parallel
Strand 4
A
96 98anti-parallel
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There are 2 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
15 17anti-parallel
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There are 4 strands in S4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
196 199anti-parallel
Strand 3
A
259 263anti-parallel
Strand 4
A
266 270anti-parallel
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There are 3 strands in S5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 77first strand
Strand 2
A
80 86anti-parallel
Strand 3
A
103 108anti-parallel
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There are 4 strands in S6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
282 286anti-parallel
Strand 4
A
275 279anti-parallel
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There are 4 strands in S7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
121 125parallel
Strand 3
A
39 42anti-parallel
Strand 4
A
104 106parallel
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There are 5 strands in S8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
211 215anti-parallel
Strand 3
A
296 299parallel
Strand 4
A
221 224anti-parallel
Strand 5
A
286 290parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il