Analysis of interatomic Contacts of Structural Units in PDB entry:
1CMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CMV entry

There are 2 chains in PDB entry 1CMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12ALA 256
B
 VAL 11ALA 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1CMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 41Right-handed alpha
Helix 2
2
A
91 103Right-handed alpha
Helix 3
3
A
105 109Right-handed alpha
Helix 4
4
A
119 127Right-handed alpha
Helix 5
5
A
177 181Right-handed alpha
Helix 6
6
A
189 198Right-handed alpha
Helix 7
7
A
218 230Right-handed alpha
Helix 8
8
A
234 244Right-handed alpha
Helix 9
9
B
30 32Right-handed 310
Helix 10
10
B
36 42Right-handed alpha
Helix 11
11
B
91 103Right-handed alpha
Helix 12
12
B
105 109Right-handed alpha
Helix 13
13
B
119 127Right-handed alpha
Helix 14
14
B
177 181Right-handed alpha
Helix 15
15
B
189 200Right-handed alpha
Helix 16
16
B
218 230Right-handed alpha
Helix 17
17
B
234 245Right-handed alpha
Helix 18
18
B
249 251Right-handed 310
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There are 2 sheets in PDB entry 1CMV. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
14 22anti-parallel
Strand 3
A
81 88anti-parallel
Strand 4
A
68 77anti-parallel
Strand 5
A
58 61anti-parallel
Strand 6
A
157 161parallel
Strand 7
A
130 133anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
14 22anti-parallel
Strand 3
B
81 88anti-parallel
Strand 4
B
68 77anti-parallel
Strand 5
B
58 61anti-parallel
Strand 6
B
157 161parallel
Strand 7
B
130 133anti-parallel
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